View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16920_high_2 (Length: 316)
Name: NF16920_high_2
Description: NF16920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16920_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 22 - 306
Target Start/End: Original strand, 40235553 - 40235836
Alignment:
| Q |
22 |
tcaccatcatcatcatcttcctcatcctccaacatattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattt |
121 |
Q |
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| T |
40235553 |
tcaccatcatcatcatcttcctcatcctccaacatattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattt |
40235652 |
T |
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| Q |
122 |
tgaacttgaatacattgttttcaatatgtctgaaaaacaaggaagtcattgtcctttaaagaattttcttctctgaatagtttccaaccatcatcaaaat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40235653 |
tgaacttgaatacattgttttcaatatgtctgaaaa-caaggaagtcattgtcctctaaagaattttcttctctgaatagtttccaaccatcatcaaaat |
40235751 |
T |
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| Q |
222 |
aaagcttgcgaccaatagaacgtgctttgacatgccaatctgttcctctatgatcccttaggataaaatatttcaataccctttg |
306 |
Q |
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| T |
40235752 |
aaagcttgcgaccaatagaacgtgctttgacatgccaatctgttcctctatgatcccttaggataaaatatttcaataccctttg |
40235836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 37 - 306
Target Start/End: Complemental strand, 17461061 - 17460793
Alignment:
| Q |
37 |
tcttcctcatcctccaacatattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacat |
136 |
Q |
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| T |
17461061 |
tcttcctcatcctctatcgtattagtattttcctcctcgtccattaccttcatcttttgacacattgatgatagttcaaggattttgaacttgaatacat |
17460962 |
T |
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| Q |
137 |
tgttttcaatatgtctgaaaaacaaggaagtcattgtcctttaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagcttgcgaccaa |
236 |
Q |
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| T |
17460961 |
tgttttcaatatgcgtgaaaa-caaggaagtcattgtcctctaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagtttgttgccaa |
17460863 |
T |
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| Q |
237 |
tagaacgtgctttgacatgccaatctgttcctctatgatcccttaggataaaatatttcaataccctttg |
306 |
Q |
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| T |
17460862 |
tagaacacactttgacatgccaatcacttcctctatgatctcttaggataaaatccttcaatagcctttg |
17460793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 37 - 290
Target Start/End: Complemental strand, 17454844 - 17454592
Alignment:
| Q |
37 |
tcttcctcatcctccaacatattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacat |
136 |
Q |
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| T |
17454844 |
tcttcctcatcttccatcatattattattttcctcatcttccatcaccggcatcttttcacacattgatgatagttcaagaattttgaatttgaatacat |
17454745 |
T |
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| Q |
137 |
tgttttcaatatgtctgaaaaacaaggaagtcattgtcctttaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagcttgcgaccaa |
236 |
Q |
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||||||||||||| | |||||||||||||||||| ||| |||| ||||||||| ||| ||| ||||| |||||||||||||| | || | ||||| |
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| T |
17454744 |
tgttttcaatatgagt-aaaaacaaggaagtcattctccactaaacaattttcttgtctaaatttcttccagccatcatcaaaatagaactcgtcaccaa |
17454646 |
T |
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| Q |
237 |
tagaacgtgctttgacatgccaatctgttcctctatgatcccttaggataaaat |
290 |
Q |
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|| ||| |||||||||| ||||||| ||| |||| |||| ||||||||||||| |
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| T |
17454645 |
tacgacgcgctttgacataccaatctcttcttctacgatctcttaggataaaat |
17454592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 17393971 - 17394237
Alignment:
| Q |
20 |
catcaccatcatcatcatcttcctcatcctccaacatattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaat |
119 |
Q |
| |
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|||||||||||| | |||||||||||||||| |||| |||||||||||| | | |||||||| |||||| |||||| |||||||||||| ||| |
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| T |
17393971 |
catcaccatcatttacctcttcctcatcctcca---tattgttattttcctccacgacacttaccttcttcttttcacacatcgatgatagttcaagaat |
17394067 |
T |
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| Q |
120 |
tttgaacttgaatacattgttttcaatatgtctgaaaaacaaggaagtcattgtcctttaaagaattttcttctctgaatagtttccaaccatcatcaaa |
219 |
Q |
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||||||| ||||||| | |||||||||||| | |||||||||||| |||| |||| |||||||||||| ||||| ||| | ||||| ||| | ||||| |
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| T |
17394068 |
tttgaacctgaatacggtattttcaatatgtgt-aaaaacaaggaaatcatcctcctctaaagaattttcctctctaaattgcttccagccaccgtcaaa |
17394166 |
T |
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| Q |
220 |
ataaagcttgcgaccaatagaacgtgctttgacatgccaatctgttcctctatgatcccttaggataaaat |
290 |
Q |
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|||||||| |||||| ||| |||||||||||||||||| |||||||| |||| ||||||||||||| |
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| T |
17394167 |
ataaagctcatcgccaataagacgagctttgacatgccaatctcttcctctacgatctcttaggataaaat |
17394237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 32844015 - 32843981
Alignment:
| Q |
1 |
atttcaacaatatcttcaccatcaccatcatcatc |
35 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
32844015 |
atttcaacaatatcttcaccatcatcatcatcatc |
32843981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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