View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16920_high_3 (Length: 246)
Name: NF16920_high_3
Description: NF16920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16920_high_3 |
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| [»] scaffold0117 (2 HSPs) |
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Alignment Details
Target: scaffold0117 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 15020 - 14783
Alignment:
| Q |
6 |
aagcaaaggatgatccaaatatactggttgtaacgtatgagtttgagcatcaccaccagtccttcgccgatacggtgctccatcaaatcttcttcttaat |
105 |
Q |
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| T |
15020 |
aagcaaaggatgatccaaatatactggttgtaacgtatgagtttgagcatcaccaccagtccttcgccgatacggtgctccttcaaatcttcttcttaat |
14921 |
T |
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| Q |
106 |
ccacttctctatttattcatgttgcatctattgatttattttcttttgttacatgtgtttctttaattttagcggttaacagttttcacctcttggaaca |
205 |
Q |
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| T |
14920 |
ccacttctctatttattcatgttgcatctattgatttattttcttttgttgtatgtgtttctttaattttagcggttaacagttttcacctcttggaaca |
14821 |
T |
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| Q |
206 |
gttatacgatattctttgtctcatccttcattgatgat |
243 |
Q |
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| T |
14820 |
gttatacgatattctttgtctcatccttcattgatgat |
14783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 17614 - 17509
Alignment:
| Q |
139 |
atttattttcttttgttac-atgtgtttctttaattttagcggttaacagttttcacctcttggaacagttatacgatattctttgtctcatccttcatt |
237 |
Q |
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| T |
17614 |
atttattttcttttgttagtatgtgttcgtttaatttcagctgctaacagttttcacctcttggaatagttatgcgatatcctttatctcatccttcttc |
17515 |
T |
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| Q |
238 |
gatgat |
243 |
Q |
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| T |
17514 |
gatgat |
17509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 10279227 - 10279108
Alignment:
| Q |
88 |
tcaaatcttcttcttaatccacttctctatttattcatgttgcatctattgatttattttcttttgttacatgtgtttctttaattttagcggttaacag |
187 |
Q |
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| T |
10279227 |
tcaaatctccttctcaatcaacttctctcttcattcatgttgcatctattaatttattttcttttatt-cgtatgttccttaaatttctgcggctaacag |
10279129 |
T |
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| Q |
188 |
ttttcacctcttggaacagtt |
208 |
Q |
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| T |
10279128 |
tttttacctattggaacagtt |
10279108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 10267408 - 10267331
Alignment:
| Q |
132 |
tctattgatttattttcttttgttac-atgtgtttctttaattttagcggttaacagttttcacctcttggaacagtt |
208 |
Q |
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| T |
10267408 |
tctattaatttattttcttttattcgtatgtgatcctttaatttcagcggctaacagttttcacctgttgtaacagtt |
10267331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 50355218 - 50355168
Alignment:
| Q |
6 |
aagcaaaggatgatccaaatatactggttgtaacgtatgagtttgagcatc |
56 |
Q |
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| T |
50355218 |
aagcaaaggatgatccaaatatcctggttgtaacgtacgagtttgagcatc |
50355168 |
T |
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