View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16920_low_1 (Length: 661)
Name: NF16920_low_1
Description: NF16920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16920_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 28536910 - 28537223
Alignment:
| Q |
18 |
caaagggttattgatgaaattatcacaggttcaaacctttttcgtgtatagacgtccaaactctttttacacaatgtcctacatgatgcaactattgatt |
117 |
Q |
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| T |
28536910 |
caaagggttattgatgaaattatcacaggttcaaacctttttcgtgtatagacgtccaaactctttttacacaatgtcctacatgatgcaactattgatt |
28537009 |
T |
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| Q |
118 |
tgtttaaggttgaaaaacctcaaacatgtttggtcccaatgaaattgagattgaccaatgtcaattcaattgctacaataatatatcctaactcaaaaag |
217 |
Q |
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| T |
28537010 |
tgtttaaggttgaaaaacctcaaacatgtttggtcccaa-------------------tgtcaattcaattgctacaataatatatcctaactcaaaaag |
28537090 |
T |
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| Q |
218 |
gaatatgaaacataagggccataatggaccctctcacatgaaaagcatgaaaggaaacaataaattgatatctactatagttattatgagaaatagactt |
317 |
Q |
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| T |
28537091 |
gaatgtgaaacataagggccataatggaccctctcacatgaaaagcatgaaaggaaacaataaattgatatctactatagttattatgagaaatagactt |
28537190 |
T |
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| Q |
318 |
ggatcttgtaattgttttcatgagccccacaag |
350 |
Q |
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| T |
28537191 |
agatcttgtaattgttttcatgagccccacaag |
28537223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 473 - 643
Target Start/End: Original strand, 28537346 - 28537516
Alignment:
| Q |
473 |
gctcaccttatcaggatgcagataaaccttatccctaaatagtagaacaaccccagcatcatcaagaaccttagcaaattttgcagcctcatcttgattc |
572 |
Q |
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| T |
28537346 |
gctcaccttatcaggatgcagataaaccttatccctaaatagtagaacaaccccagcatcatcaagaaccttagcaaattttgcagcctcatcttgattc |
28537445 |
T |
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| Q |
573 |
ctagcaataccactactctgacaagcttgaagaagttcaaaataggaaataatttctttccctcccatacc |
643 |
Q |
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| T |
28537446 |
ctagcaataccactactctgacaagcttgaagaagttcaaaataggaaataatttctttccctcccatacc |
28537516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 477 - 631
Target Start/End: Original strand, 32396971 - 32397125
Alignment:
| Q |
477 |
accttatcaggatgcagataaaccttatccctaaatagtagaacaaccccagcatcatcaagaaccttagcaaattttgcagcctcatcttgattcctag |
576 |
Q |
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|||||||||||||| ||||| ||||||||||| || || |||| ||| ||||| |||||||||||||||||| || |||||||| || |||||||| |
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| T |
32396971 |
accttatcaggatgaagatagaccttatccctgaagagaagaataacaccagcttcatcaagaaccttagcatatgcagcagcctcttcagaattcctag |
32397070 |
T |
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| Q |
577 |
caataccactactctgacaagcttgaagaagttcaaaataggaaataatttcttt |
631 |
Q |
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| T |
32397071 |
caacacccatactctcacaagcttcaataagttcattataagaaataacttcttt |
32397125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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