View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16921_high_11 (Length: 460)
Name: NF16921_high_11
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16921_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 12 - 443
Target Start/End: Original strand, 41065174 - 41065605
Alignment:
| Q |
12 |
atgaagagtgcaatagaatcaaatacaaagaaaattataaacggtgcttctggagatatatttgcttcaccaagtatcatcccttccggaatattgtttg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41065174 |
atgaagagtgcaatagaatcaaatacaaagaaaattataaacggtgcttctggagatatatttgcttcaccaagtatcatcccttctggaatattgtttg |
41065273 |
T |
|
| Q |
112 |
gatcatcaacaaattgaccagggacagtgaaaatcgcagcaaatgcaaccgttgctattagtactgccacaacggttgttgagtttattgcattgttgag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41065274 |
gatcatcaacaaattgaccagggacagtgaaaatcgcagcaaatgcaaccgttgctattagtactgccacaacggttgttgagtttattgcattgttgag |
41065373 |
T |
|
| Q |
212 |
tccttctgtattcatcttgttgatacgttttgcgattccttgaacacgttttcgtgtctggcgtgtgtgttctaattggtaatgtacctcgtgctttatg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41065374 |
tccttctgtattcatcttgttgatacgttttgcgattccttgaacacgttttcgtgtctggcgtgtgtgttctaattggtaatgtacctcgtgctttatg |
41065473 |
T |
|
| Q |
312 |
tcgcttacagtttgctttaactcgtgagctgtggtttttgatccttgtggtttcatggattttgcactttgaacaccatgatctaatagaatggctttaa |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41065474 |
tcgcttacagtttgctttaactcgtgagctgtgctttttgatccttgtggtttcatggattttgcactttgaacaccatgatctaatagaatggctttaa |
41065573 |
T |
|
| Q |
412 |
catcctggttccctattttctcagcagtgtct |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
41065574 |
catcctggttccctattttctcagcagtgtct |
41065605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 108 - 331
Target Start/End: Original strand, 23031704 - 23031927
Alignment:
| Q |
108 |
tttggatcatcaacaaattgaccagggacagtgaaaatcgcagcaaatgcaaccgttgctattagtactgccacaacggttgttgagtttattgcattgt |
207 |
Q |
| |
|
||||||||||| || ||||| || ||||||||||| || || || || |||||||||||||| || ||||| || || ||||| |||||||||||||||| |
|
|
| T |
23031704 |
tttggatcatccacgaattggcctgggacagtgaagatggctgcgaaggcaaccgttgctatgaggactgcgacgactgttgtggagtttattgcattgt |
23031803 |
T |
|
| Q |
208 |
tgagtccttctgtattcatcttgttgatacgttttgcgattccttgaacacgttttcgtgtctggcgtgtgtgttctaattggtaatgtacctcgtgctt |
307 |
Q |
| |
|
||||||||||||| | ||| ||||||| ||||||||||||||||||||| | | |||| || ||||| |||||||||| ||||| ||| || || ||||| |
|
|
| T |
23031804 |
tgagtccttctgtgtgcattttgttgagacgttttgcgattccttgaacgcttcttcgcgtttggcgagtgtgttctagttggtgatggacttcatgctt |
23031903 |
T |
|
| Q |
308 |
tatgtcgcttacagtttgctttaa |
331 |
Q |
| |
|
|||||| || || ||||| ||||| |
|
|
| T |
23031904 |
tatgtcactgactgtttgttttaa |
23031927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University