View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16921_high_23 (Length: 269)
Name: NF16921_high_23
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16921_high_23 |
 | |
|
| [»] scaffold0262 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 36663014 - 36663257
Alignment:
| Q |
10 |
taatactaagactaaccttcaaatttaattacgagcgaggttactattttccgctgtgtttatgcaaaaagggaataacaataataatattaagaacatg |
109 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36663014 |
taatactaagactaaccttcaaaattaattacgagcgaggttactattttccactgtgtttatgcaaaaagggaataacaataataatattaagaacatg |
36663113 |
T |
|
| Q |
110 |
aaatgtctatatggatctttcacggcattgttctggactccatctggagattgtgcgttcttcgatggtatagtttgtcaaacataacagagactcatca |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
36663114 |
acatgtctatatggatctttcacggcattgttctggactccatcgggagattgtgcgttcttcaacggtatagtttgtcaaacataacagagactcatca |
36663213 |
T |
|
| Q |
210 |
ttgttaccatttttgttaacatacaaaactaataaggtttttgc |
253 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36663214 |
ttgttaccatttttgttaacgtacaaaactaataaggtttttgc |
36663257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 6320 - 6556
Alignment:
| Q |
17 |
aagactaaccttcaaatttaattacgagcgaggttactattttccgctgtgtttatgcaaaaagggaataacaataataatattaagaacatgaaatgtc |
116 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||| ||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
6320 |
aagactgaccttcaaatttaattatgggcgagtttagtattttctgctgtgtttatgcagaaagggaataacaataataatattaagatcatggcatgtc |
6419 |
T |
|
| Q |
117 |
tatatggatctttcacggcattgttctggactccatctggagattgtgcgttcttcgatggtatagtttgtcaaacataacagagactcatcattgttac |
216 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| || || |
|
|
| T |
6420 |
tatatggatctttaacgccattgctctggactccatctggagattgtgcgttcttcgatggtataatttgtcaaacataacagagacttatcacagtcac |
6519 |
T |
|
| Q |
217 |
catttttgttaacatacaaaactaataaggtttttgc |
253 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
6520 |
catttttgttaacgtacaaaactagtaaggtttttgc |
6556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 10097 - 10027
Alignment:
| Q |
183 |
tttgtcaaacataacagagactcatcattgttaccatttttgttaacatacaaaactaataaggtttttgc |
253 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
10097 |
tttgtcaaacataacagagacttatcactgtcaccatttttgttaacgtacaaaactagtaaggtttttgc |
10027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 70 - 250
Target Start/End: Complemental strand, 13458449 - 13458269
Alignment:
| Q |
70 |
tatgcaaaaagggaataacaataataatattaagaacatgaaatgtctatatggatctttcacggcattgttctggactccatctggagattgtgcgttc |
169 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13458449 |
tatgcagaaagggaataataataataaaattaagaatatgaaatgtctatatggatctttcacggcattgttctggactccatctagagattgtgcgttc |
13458350 |
T |
|
| Q |
170 |
ttcgatggtatagtttgtcaaacataacagagactcatcattgttaccatttttgttaacatacaaaactaataaggtttt |
250 |
Q |
| |
|
||| | |||||||||||| ||||||| ||||||||||||| ||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
13458349 |
ttcaacggtatagtttgtgaaacatagcagagactcatcactgtgaacatttttgttaatctacaaaactaataaggtttt |
13458269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University