View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16921_high_25 (Length: 242)
Name: NF16921_high_25
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16921_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 21395142 - 21395366
Alignment:
| Q |
3 |
gtttgattgctttatattattctaaatgtaaatgtagatgataataatattttcttttaaaaatgaaaaatgcagacctaattatctagcaagagaactt |
102 |
Q |
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| T |
21395142 |
gtttggttgctttatattattctaaatgtaaatgtagatgataataatattttcttttaaaaatgaaaa-tgcagacctaactatctagcaagagaactt |
21395240 |
T |
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| Q |
103 |
acgagtgcggcacttcatggcgatagtggattcttcgtaggataactaacaattctagactagaaacaataataaaaatatatttaaaagaccaataacc |
202 |
Q |
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| T |
21395241 |
acgagtgcggcacttcatggcgatagtggattcttcgtgggataactaa-----ctagactggaaacaataataaaaatatatttaaaagaccaataacc |
21395335 |
T |
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| Q |
203 |
acactagagttatattttttccaagaataat |
233 |
Q |
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|||||||||||||||||||| ||||||||| |
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| T |
21395336 |
acactagagttatattttttttaagaataat |
21395366 |
T |
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