View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16921_high_28 (Length: 220)
Name: NF16921_high_28
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16921_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 41918733 - 41918536
Alignment:
| Q |
14 |
caattgagatgaaaatataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctc |
113 |
Q |
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| T |
41918733 |
caattgagatgaaaatataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctc |
41918634 |
T |
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| Q |
114 |
ttatgttcatcattctcttcatgtttgttttcaacaacgagtaaattccatactcgtaatgtctcttcgtcaagcattacttcaacttctgatgatgg |
211 |
Q |
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| T |
41918633 |
ttatgttcatcattctcttcatgtttgttttcaacaacgagtaaattccatactcgtaatgtctcttcgtcaagcattacttcaacttctgctgatgg |
41918536 |
T |
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Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 1687605 - 1687440
Alignment:
| Q |
21 |
gatgaaaatataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctcttatgtt |
120 |
Q |
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|||||||||||||||||||| |||||||| || ||| |||||| ||| || ||| ||| |||||||||| ||||||||||||||||||||||| |
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| T |
1687605 |
gatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttatgtt |
1687506 |
T |
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| Q |
121 |
catcattctcttcatgtttgttttcaacaacgagtaaattccatactcgtaatgtctcttcgtcaa |
186 |
Q |
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|||| ||||| ||||||||||||||| ||||||| || |||||||| ||||||||||||||||||| |
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| T |
1687505 |
catctttctcatcatgtttgttttcagcaacgagcaagttccatacacgtaatgtctcttcgtcaa |
1687440 |
T |
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