View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16921_high_29 (Length: 213)
Name: NF16921_high_29
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16921_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 12051988 - 12051807
Alignment:
| Q |
14 |
cacagagagataacaaaaatagttcacaataatatagataaaccgaaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggt |
113 |
Q |
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| T |
12051988 |
cacaaagagataacaacaatagttcacaataatatagataaaccgaaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggt |
12051889 |
T |
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| Q |
114 |
tgcgccgagcgaggaaggaatcgattccataaggtttgtaatcaaattaagcaaaggtaggaaggttattgttgttttcact |
195 |
Q |
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| T |
12051888 |
tgcgccgagcgaggaaggaatcgattccataaggtttgtaatcaaattaagcaaaggtaggaaggttattgttgttttcact |
12051807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 12059392 - 12059235
Alignment:
| Q |
31 |
aatagttcacaataatatagataaaccgaaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggttgcgccgagcgaggaag |
130 |
Q |
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| T |
12059392 |
aatagttcataataatatagttaaattgaaagaatgttacttattatgtcaattgcagttcgaccattggtaaatcttctggctgcactgatcg----gg |
12059297 |
T |
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| Q |
131 |
gaatcgattccataaggtttgtaatcaaattaagcaaaggtaggaaggttattgttgttttc |
192 |
Q |
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| T |
12059296 |
gagtcgattccataaggtttctaatcaaattcagtaaaggtaggaaggttattgttgttttc |
12059235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 58 - 195
Target Start/End: Original strand, 5573419 - 5573552
Alignment:
| Q |
58 |
gaaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggttgcgccgagcgaggaaggaatcgattccataaggtttgtaatca |
157 |
Q |
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| T |
5573419 |
gaaagaatgttacttattatgtcaattgcagttctaccgttggtaaatcttccggttggacccatc--ggaa--agtcaattccataaggtttgtaatta |
5573514 |
T |
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| Q |
158 |
aattaagcaaaggtaggaaggttattgttgttttcact |
195 |
Q |
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| T |
5573515 |
gattttgcagaggtaggaaggttattgttgtttccact |
5573552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 5586951 - 5587083
Alignment:
| Q |
59 |
aaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggttgcgccgagcgaggaaggaatcgattccataaggtttgtaatcaa |
158 |
Q |
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| T |
5586951 |
aaagaatgttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatc--ggaa--agtcgattccatagggattgtaattag |
5587046 |
T |
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| Q |
159 |
attaagcaaaggtaggaaggttattgttgttttcact |
195 |
Q |
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| T |
5587047 |
attttgcagaggtaggaaggttattgttgtttccact |
5587083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 5576591 - 5576714
Alignment:
| Q |
68 |
tacttattatgttaattgcagttcgaccgttggtaaatcttctggttgcgccgagcgaggaaggaatcgattccataaggtttgtaatcaaattaagcaa |
167 |
Q |
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| T |
5576591 |
tacttattatgtcaattgaagttcgaccgttggtaaatcttccggttgggcccatcg-ggaag---tcaattccataaggtttgtaattagattttgcag |
5576686 |
T |
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| Q |
168 |
aggtaggaaggttattgttgttttcact |
195 |
Q |
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| T |
5576687 |
aggtgggaaggttgttattgtttccact |
5576714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 5593184 - 5593240
Alignment:
| Q |
59 |
aaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggttg |
115 |
Q |
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| T |
5593184 |
aaagaatgttacttattatgtcaattgtagttcgaccgttggtaaatcttccggttg |
5593240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 157
Target Start/End: Complemental strand, 12064776 - 12064681
Alignment:
| Q |
58 |
gaaagaacgttacttattatgttaattgcagttcgaccgttggtaaatcttctggttgcgccgagcgaggaaggaatcgattccataaggtttgtaatca |
157 |
Q |
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| T |
12064776 |
gaaagaatgttacttattatgtcaattgtagttcgaccattggtaaatcttccggttgttccgatcg----gggagtcaattccataaggtttgtaatca |
12064681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 5582735 - 5582793
Alignment:
| Q |
42 |
ataatatagataaaccgaaagaac-gttacttattatgttaattgcagttcgaccgttg |
99 |
Q |
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| T |
5582735 |
ataatatagataaattgaaagaattgttacttattatgtcaattgcagttcgaccgttg |
5582793 |
T |
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