View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16921_low_15 (Length: 446)
Name: NF16921_low_15
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16921_low_15 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 446
Target Start/End: Complemental strand, 36605093 - 36604662
Alignment:
| Q |
17 |
atatttttggcgtgtgaatgtgatttatgttggttttctgttccacaatagtgatttgattcnnnnnnncttcgtttatatatgaccatcttgaacaaag |
116 |
Q |
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| T |
36605093 |
atatttttggcgtgtgaatgtgatttatgttggttttctgttccacaatagtgatttgattctttttttcttcgtttatatatgaccatcttgaacaaag |
36604994 |
T |
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| Q |
117 |
tttgtatttgtctgtgtgtgttagggtaagggtttatcaaataagattttcagtgatttttgtaaaatttattcctttagattgagtttgaatttaagtg |
216 |
Q |
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| T |
36604993 |
tttgtatttgtctgtgtgtgttagggtaagggtttatcaaatgagattttcagtgatttttgtaaaattgattcctttagattgagtttgaatttaagtg |
36604894 |
T |
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| Q |
217 |
atttatgttttgatgtgtgaaattttcagtggaagacaa--nnnnnnnnnnnngattacttatagttaaattgagctttggaataatcaattttgattca |
314 |
Q |
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| T |
36604893 |
atttatgttttgatgtgtgaaattttcagtggaagacaattttttttttttttgattacttatagttaaatcgagctttggaataatcaattttgattca |
36604794 |
T |
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| Q |
315 |
tatgaccgtatgtttgacattgaggcaaaattgtggtgaacatgccttaaaaacaggatttttatggtttctggcatggaagattccaatcatgcttctg |
414 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36604793 |
tatgaccgaatgtttgacattgaggcaaaattgtggtgaacatgtcttaaaaacaggatttttatggtttctggcatggaagattccaatcatgcttctg |
36604694 |
T |
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| Q |
415 |
ttttttgtctcgtgatggtttttgcataaggg |
446 |
Q |
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| T |
36604693 |
ttttttgtctcgtgatggtttttgcataaggg |
36604662 |
T |
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