View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16921_low_16 (Length: 432)
Name: NF16921_low_16
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16921_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 48491745 - 48492152
Alignment:
| Q |
11 |
cacagaattagttcaaaacatgattcaacaagtagttcattgaactcgatacaacgtacagttaatctaataaacaagtcgaactgatggagcagttagt |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48491745 |
cacagaatcagttcaaaacatgattcaacaagtagttcattgaactcgatacaacgtacaattaatctaataaacaagtcgaactgatggagcagttagt |
48491844 |
T |
|
| Q |
111 |
gggcttgaattgattcaaacttcagtagaaaaataatgttcatgtcaaacttgagtccgagcaggacaaattcttatcaaataaagtcgagctgaagcaa |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48491845 |
gggcttgaattgattcaaacttgagtagaaaaataatgttcatgtcaaacttgagtccgagcaggacaaattcttatcaaataaagtcgagctgaagcaa |
48491944 |
T |
|
| Q |
211 |
gttttgactcaaatggactaatttccatgatagaagaagttattgtaccttgagggaaagaagcaagtgactttccacaagcacttttaagcaattcagc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
48491945 |
gttttgactcaaatggactaatttccatgatagaagaagttattgtaccttgagggaaagaagcaagtgactttccacaagcacttttaagcaattcggc |
48492044 |
T |
|
| Q |
311 |
atcatcagaaaatgctgcatatccatcagcagttattccccaaaatagtggtaccttaccaaattgatcctgtc-nnnnnnntaatacactaagcaaaat |
409 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48492045 |
atcatcagcaaatgctgcatatccatcagcagttattccccaaaatagtggtaccttaccaaattgatcctgtcaaaaaaaataatacactaagcaaaat |
48492144 |
T |
|
| Q |
410 |
gtggaaag |
417 |
Q |
| |
|
|||||||| |
|
|
| T |
48492145 |
gtggaaag |
48492152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 257 - 381
Target Start/End: Complemental strand, 7795320 - 7795196
Alignment:
| Q |
257 |
accttgagggaaagaagcaagtgactttccacaagcacttttaagcaattcagcatcatcagaaaatgctgcatatccatcagcagttattccccaaaat |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| ||| |||| ||||||||||||||||||||| || |
|
|
| T |
7795320 |
accttgagggaaagaagcaagtgactttccacaagcacctttaagcaaatcagcatcatcagcaaaggctacatagccatcagcagttattccccaatat |
7795221 |
T |
|
| Q |
357 |
agtggtaccttaccaaattgatcct |
381 |
Q |
| |
|
|| || ||||| ||| |||| |||| |
|
|
| T |
7795220 |
agaggaacctttccagattggtcct |
7795196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University