View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16921_low_2 (Length: 782)

Name: NF16921_low_2
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16921_low_2
NF16921_low_2
[»] chr6 (63 HSPs)
chr6 (401-581)||(5283432-5283612)
chr6 (263-396)||(5283660-5283793)
chr6 (263-396)||(5256596-5256729)
chr6 (416-581)||(5101038-5101203)
chr6 (416-581)||(5136139-5136304)
chr6 (452-581)||(5256370-5256499)
chr6 (416-581)||(5351310-5351475)
chr6 (412-581)||(5156233-5156402)
chr6 (416-581)||(5426810-5426975)
chr6 (421-582)||(5438926-5439087)
chr6 (458-581)||(5448561-5448684)
chr6 (465-582)||(5372056-5372173)
chr6 (15-137)||(5257265-5257387)
chr6 (15-137)||(5434063-5434185)
chr6 (15-137)||(5073839-5073961)
chr6 (155-253)||(5257106-5257204)
chr6 (421-582)||(5180993-5181154)
chr6 (412-581)||(5353083-5353252)
chr6 (466-582)||(5398006-5398122)
chr6 (15-137)||(5176767-5176889)
chr6 (464-581)||(5334137-5334254)
chr6 (465-581)||(5098170-5098286)
chr6 (147-247)||(5284170-5284270)
chr6 (15-130)||(5284327-5284442)
chr6 (15-137)||(5278594-5278716)
chr6 (421-542)||(5242774-5242895)
chr6 (17-137)||(5396980-5397100)
chr6 (15-126)||(5128359-5128470)
chr6 (15-126)||(5447615-5447726)
chr6 (619-776)||(5133790-5133947)
chr6 (421-542)||(5345941-5346062)
chr6 (495-571)||(2938898-2938974)
chr6 (15-118)||(5102564-5102667)
chr6 (15-126)||(5690101-5690212)
chr6 (17-87)||(5181908-5181978)
chr6 (412-542)||(5689165-5689295)
chr6 (20-137)||(5066625-5066742)
chr6 (20-137)||(5157559-5157676)
chr6 (20-137)||(5350427-5350544)
chr6 (20-137)||(5425943-5426060)
chr6 (641-776)||(5348393-5348528)
chr6 (414-544)||(5126889-5127019)
chr6 (415-540)||(5177645-5177770)
chr6 (640-749)||(5276674-5276783)
chr6 (648-776)||(5075616-5075744)
chr6 (20-68)||(5370604-5370652)
chr6 (637-740)||(5174844-5174947)
chr6 (308-375)||(5181244-5181311)
chr6 (15-74)||(5354608-5354667)
chr6 (15-137)||(5281328-5281450)
chr6 (15-137)||(5344889-5345011)
chr6 (306-375)||(5101271-5101340)
chr6 (306-375)||(5136372-5136441)
chr6 (647-776)||(5341682-5341811)
chr6 (463-568)||(5384148-5384253)
chr6 (26-71)||(5447196-5447241)
chr6 (421-540)||(5279476-5279595)
chr6 (641-751)||(5368442-5368552)
chr6 (20-74)||(5383359-5383413)
chr6 (20-105)||(5096741-5096826)
chr6 (649-710)||(5395033-5395094)
chr6 (641-710)||(5423735-5423804)
chr6 (647-716)||(5431395-5431464)
[»] chr3 (4 HSPs)
chr3 (460-581)||(47985613-47985734)
chr3 (460-581)||(47994900-47995021)
chr3 (460-581)||(48004187-48004308)
chr3 (460-581)||(48013472-48013593)
[»] chr7 (1 HSPs)
chr7 (18-137)||(36213760-36213879)
[»] chr5 (2 HSPs)
chr5 (15-137)||(8877637-8877759)
chr5 (463-581)||(8879486-8879604)
[»] chr4 (14 HSPs)
chr4 (15-137)||(4344674-4344796)
chr4 (15-137)||(4361105-4361227)
chr4 (15-105)||(4133388-4133478)
chr4 (15-137)||(4335373-4335495)
chr4 (499-580)||(4319523-4319604)
chr4 (17-105)||(4123902-4123990)
chr4 (638-710)||(4330468-4330540)
chr4 (508-580)||(4336904-4336976)
chr4 (637-682)||(4126416-4126461)
chr4 (516-571)||(4122874-4122929)
chr4 (637-682)||(4342920-4342965)
chr4 (15-71)||(4320616-4320672)
chr4 (508-580)||(4362554-4362626)
chr4 (15-120)||(6815498-6815603)
[»] scaffold0294 (2 HSPs)
scaffold0294 (20-126)||(8842-8948)
scaffold0294 (463-568)||(8107-8212)
[»] chr2 (2 HSPs)
chr2 (453-581)||(22583507-22583638)
chr2 (15-85)||(22584197-22584267)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 3e-59; HSPs: 63)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 401 - 581
Target Start/End: Complemental strand, 5283612 - 5283432
Alignment:
Q  401 ttgagcataccttacttttgcagaatatggatgtcaatagtggtggtggtgatttgattcctggtgatagttatccagattggttgacctttagttctga 500  Q
    ||||||||||||||||||| ||||||||||||||||||||  |||||| |  |||| |||||||||||||||||||||||||||||||||||||||| ||    
T  5283612 ttgagcataccttacttttacagaatatggatgtcaataggagtggtgattgtttgcttcctggtgatagttatccagattggttgacctttagttcaga 5283513  T
Q  501 aggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtctgtacttcaac 581  Q
    |||||| ||||||| |||| | |||||| |||| |||||| |||||||||||||||||||||||||||||| |||||||||    
T  5283512 aggttcttctgtaacttttgatgtccctcaagttgaagggtgtaacttgaagtcaatgatgtgcattgtctatacttcaac 5283432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 263 - 396
Target Start/End: Complemental strand, 5283793 - 5283660
Alignment:
Q  263 caaattttgttatcagtcattgttactattagtatcttccatcactgatagtctgttgtatgaatccaagcaaatctttatttgtagggtcaaaatatga 362  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||   |||||||||||    
T  5283793 caaattttgttatcagtcattgttattattagtatcttccatcactgatagtctgttttatgaatccaagcaaatatttatttgtaacatcaaaatatga 5283694  T
Q  363 ttaactaccttataagggaagttatatcttcaat 396  Q
    ||||||||||||||||||||||||||||||||||    
T  5283693 ttaactaccttataagggaagttatatcttcaat 5283660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 263 - 396
Target Start/End: Complemental strand, 5256729 - 5256596
Alignment:
Q  263 caaattttgttatcagtcattgttactattagtatcttccatcactgatagtctgttgtatgaatccaagcaaatctttatttgtagggtcaaaatatga 362  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||  | ||||||||||    
T  5256729 caaattttgttatcagccattgttactattagtatcttccatcactgatagtctgttttatgaatccaagaaaatctttatttgtaacgccaaaatatga 5256630  T
Q  363 ttaactaccttataagggaagttatatcttcaat 396  Q
    ||||||||||||||||||||||||||| ||||||    
T  5256629 ttaactaccttataagggaagttatatattcaat 5256596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 416 - 581
Target Start/End: Complemental strand, 5101203 - 5101038
Alignment:
Q  416 ttttgcagaatatggatgtcaatagtggtggtggtgatttgattcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaa 515  Q
    ||||||||||||| |||||||||||| ||||||||  |||| |||||||||||||||||||| ||||||| ||||||  ||| |||||||| |||||||     
T  5101203 ttttgcagaatatagatgtcaatagtagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttcttctgtaac 5101104  T
Q  516 ttttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtctgtacttcaac 581  Q
    |||  |||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  5101103 tttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaac 5101038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 416 - 581
Target Start/End: Complemental strand, 5136304 - 5136139
Alignment:
Q  416 ttttgcagaatatggatgtcaatagtggtggtggtgatttgattcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaa 515  Q
    ||||||||||||| |||||||||||  ||||||||  |||| |||||||||||||||||||| ||||||| ||||||  ||| |||||||| |||||||     
T  5136304 ttttgcagaatatagatgtcaatagaagtggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttcttctgtaac 5136205  T
Q  516 ttttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtctgtacttcaac 581  Q
    |||  |||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  5136204 tttagaagtccctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaac 5136139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 452 - 581
Target Start/End: Complemental strand, 5256499 - 5256370
Alignment:
Q  452 atttgattcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaa 551  Q
    ||||| |||||||||||||| ||||| ||||||| |||| ||||||||||||||| ||||||| |||| ||||||| ||||| ||||||||||||||||     
T  5256499 atttgcttcctggtgatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgat 5256400  T
Q  552 gtcaatgatgtgcattgtctgtacttcaac 581  Q
    |||||||||||||||||||| |||||||||    
T  5256399 gtcaatgatgtgcattgtctatacttcaac 5256370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 416 - 581
Target Start/End: Original strand, 5351310 - 5351475
Alignment:
Q  416 ttttgcagaatatggatgtcaatagtggtggtggtgatttgattcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaa 515  Q
    ||||||||||||||||| |||||||  || |||||  |||| |||||||||||||||||||| ||||||| ||||||| ||| |||| ||| ||||| ||    
T  5351310 ttttgcagaatatggatctcaataggagtagtggttgtttgcttcctggtgatagttatccaaattggttaacctttatttcagaagtttcttctgtgaa 5351409  T
Q  516 ttttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtctgtacttcaac 581  Q
     ||| |||| ||| |||||||||||||| |||||||| ||||||||||||| |||| |||||||||    
T  5351410 atttgaagttcctcaagtggaagggcgtgacttgaagacaatgatgtgcatagtctatacttcaac 5351475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 412 - 581
Target Start/End: Complemental strand, 5156402 - 5156233
Alignment:
Q  412 ttacttttgcagaatatggatgtcaatagtggtggtggtgatttgattcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctg 511  Q
    |||||||| ||||||||||||| |||| |  ||||||||  |||  | ||  |||||||||||||| ||||||| |||| || |||||||||||| ||||    
T  5156402 ttacttttccagaatatggatggcaatgggagtggtggttgtttcctccccagtgatagttatccaaattggttaacctataattctgaaggttcttctg 5156303  T
Q  512 taaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtctgtacttcaac 581  Q
    | || ||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  5156302 tgaaatttgaagttcctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtctatacttcaac 5156233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 416 - 581
Target Start/End: Original strand, 5426810 - 5426975
Alignment:
Q  416 ttttgcagaatatggatgtcaatagtggtggtggtgatttgattcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaa 515  Q
    ||||||||||||||||| |||||||  ||||| ||  |||| |||||||||| ||||||||| | ||||| |||| ||||||||||||||| |||||||     
T  5426810 ttttgcagaatatggatctcaataggagtggtagttttttgcttcctggtgacagttatccaaagtggttaacctatagttctgaaggttcttctgtaac 5426909  T
Q  516 ttttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtctgtacttcaac 581  Q
    |||| |||| ||  ||||||||||||||||| ||||| |||| |||||||| |||| |||||||||    
T  5426910 ttttcaagttccacaagtggaagggcgtaacctgaagacaattatgtgcatagtctatacttcaac 5426975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 421 - 582
Target Start/End: Original strand, 5438926 - 5439087
Alignment:
Q  421 cagaatatggatgtcaatagtggtggtggtgatttgattcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaatttta 520  Q
    |||||||||||||||||| |  ||| ||||  |||  | || ||||||||||||||| ||||||| ||||||| |||||||||||| ||||||| ||||     
T  5438926 cagaatatggatgtcaatgggagtgatggtcgttttctccccggtgatagttatccaaattggttaacctttaattctgaaggttcttctgtaacttttc 5439025  T
Q  521 aagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtctgtacttcaact 582  Q
    |||||||| |||||||||||||||| |||| |||| ||||||||||||||| | ||||||||    
T  5439026 aagtccctcaagtggaagggcgtaatttgatgtcattgatgtgcattgtctattcttcaact 5439087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 458 - 581
Target Start/End: Original strand, 5448561 - 5448684
Alignment:
Q  458 ttcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaat 557  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||||||| ||||||| |||| |||||||| ||||||||| |||| | |||| |||| |    
T  5448561 ttcccggtgatagttatccagattggttaacctttaattctgaaggttcttctgtaacttttgaagtccctcaagtggaagagcgtcaattgacgtcatt 5448660  T
Q  558 gatgtgcattgtctgtacttcaac 581  Q
    |||||||||||||| |||||||||    
T  5448661 gatgtgcattgtctatacttcaac 5448684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 465 - 582
Target Start/End: Original strand, 5372056 - 5372173
Alignment:
Q  465 tgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgc 564  Q
    ||||||||||||| ||||||| |||| ||||||||||||||| ||||| || ||| |||| ||| ||||||||||||||||||||||| |||| ||||||    
T  5372056 tgatagttatccaaattggttaacctatagttctgaaggttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagacaattatgtgc 5372155  T
Q  565 attgtctgtacttcaact 582  Q
    | ||||||||||||||||    
T  5372156 aatgtctgtacttcaact 5372173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 5257387 - 5257265
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||  |||||| |||||||||  || | |    
T  5257387 acttagaacagatgacatctttaaccactctaattgcaaataacactgcaataacaagagtgccattatcagttttaagatcaaaaagcatcgaatttgt 5257288  T
Q  115 ctctttgtgcggttatcaaggat 137  Q
    |||||||  ||||||| ||||||    
T  5257287 ctctttgcacggttatgaaggat 5257265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 5434063 - 5434185
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||||||||| ||||||||||||||||||||  ||||||||||||||||||||| ||||| |||  |||||||    ||||| ||||||||  |||||||    
T  5434063 acttggaacatatggaatctttaaccactctgcttgcaaataacactgcaataaaaagagtgcctctttcagtactgagatcaaaaagcattggatatat 5434162  T
Q  115 ctctttgtgcggttatcaaggat 137  Q
    |||||||||||||||| ||||||    
T  5434163 ctctttgtgcggttatgaaggat 5434185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 5073961 - 5073839
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||| |||||||||  ||||||||||||||| || ||||||||||| ||||||||||||| ||| |||||||| | ||| |||||||||||  |||||||    
T  5073961 acttagaacagatgacatctttaaccactctgatagcaaataacaccgcaataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatat 5073862  T
Q  115 ctctttgtgcggttatcaaggat 137  Q
     ||||||||||| ||| ||||||    
T  5073861 ttctttgtgcggctatgaaggat 5073839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 5257204 - 5257106
Alignment:
Q  155 tcccatttccctttcaaattgcgtcttctgtcatgtcatatcttgtttcttttgatgtatcaagtaatagaatacatgaacttccatccttttcgaacc 253  Q
    |||||||||| ||||||||| | ||||||||| |||||| |||||||||||| |||||| | ||||||||||||||||||||| |||| ||||||||||    
T  5257204 tcccatttccatttcaaattacatcttctgtcttgtcatctcttgtttctttagatgtaccgagtaatagaatacatgaactttcatctttttcgaacc 5257106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 421 - 582
Target Start/End: Complemental strand, 5181154 - 5180993
Alignment:
Q  421 cagaatatggatgtcaatagtggtggtggtgatttgattcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaatttta 520  Q
    ||||||||||||||||||    |||||||| ||||  | ||  |||||||||||||| ||||||| ||||||| |||||||||||| ||||||| ||||     
T  5181154 cagaatatggatgtcaatgaaagtggtggttatttcctccccagtgatagttatccaaattggttaacctttaattctgaaggttcttctgtaacttttg 5181055  T
Q  521 aagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtctgtacttcaact 582  Q
    ||||||||   |||||||| |||||||||||| ||||||||  | |||||| || |||||||    
T  5181054 aagtccctttggtggaaggacgtaacttgaagacaatgatgctcgttgtctataattcaact 5180993  T

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Target: chr6; HSP #18
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 412 - 581
Target Start/End: Complemental strand, 5353252 - 5353083
Alignment:
Q  412 ttacttttgcagaatatggatgtcaatagtggtggtggtgatttgattcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctg 511  Q
    |||||||  |||||||||||||| ||| |  ||||||||  |||  | |||||||||||||||||| ||||||| |||||    ||||||||||| ||||    
T  5353252 ttactttcacagaatatggatgttaatggaagtggtggttgtttcctccctggtgatagttatccaaattggttaaccttctactctgaaggttcttctg 5353153  T
Q  512 taaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtctgtacttcaac 581  Q
    ||| |||| | ||||||   ||||||||||||||||||||| |||||||||||||| ||| ||| |||||    
T  5353152 taacttttcatgtccctctggtggaagggcgtaacttgaagacaatgatgtgcattatctatacgtcaac 5353083  T

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Target: chr6; HSP #19
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 466 - 582
Target Start/End: Original strand, 5398006 - 5398122
Alignment:
Q  466 gatagttatccagattggttgacctttagttctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgca 565  Q
    |||||||||||| ||||||| || | ||||||||| ||||| ||| ||| |||| |||| ||| | ||||||||||||||||||||| ||||||||||||    
T  5398006 gatagttatccaaattggttaacttatagttctgagggttcttctttaacttttgaagttcctcatgtggaagggcgtaacttgaagacaatgatgtgca 5398105  T
Q  566 ttgtctgtacttcaact 582  Q
    |||| | ||||||||||    
T  5398106 ttgtgtatacttcaact 5398122  T

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Target: chr6; HSP #20
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 5176767 - 5176889
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||||||||| |||||||||||||| |||||  ||||||||||||||||||||||||||| ||| || ||| | | ||| || ||||||||  |||| ||    
T  5176767 acttggaacaaatggaatctttaactactctgcttgcaaataacactgcaataacaagagtgcccttgtcaatagtaaggtcaaaaagcattggatacat 5176866  T
Q  115 ctctttgtgcggttatcaaggat 137  Q
    |||||||||||| ||| ||||||    
T  5176867 ctctttgtgcggctatgaaggat 5176889  T

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Target: chr6; HSP #21
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 464 - 581
Target Start/End: Original strand, 5334137 - 5334254
Alignment:
Q  464 gtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtg 563  Q
    |||||||||||||| ||||||| | || || |||||||||||| ||||| || ||| |||| ||| ||||||||||| ||||||||||| ||||||||||    
T  5334137 gtgatagttatccaaattggttaagctataattctgaaggttcttctgtgaaatttgaagttcctcaagtggaagggggtaacttgaagacaatgatgtg 5334236  T
Q  564 cattgtctgtacttcaac 581  Q
    |||| ||| || ||||||    
T  5334237 cattttctataattcaac 5334254  T

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Target: chr6; HSP #22
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 465 - 581
Target Start/End: Original strand, 5098170 - 5098286
Alignment:
Q  465 tgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgc 564  Q
    |||| |||||||||||||||| ||||||  |||||||||||| || |||| |||| |||| ||  |||||||||| |||| ||||||  |||||||||||    
T  5098170 tgatggttatccagattggttaacctttcattctgaaggttcttcggtaacttttcaagttccccaagtggaaggccgtagcttgaaaacaatgatgtgc 5098269  T
Q  565 attgtctgtacttcaac 581  Q
    ||||||| |||||||||    
T  5098270 attgtctatacttcaac 5098286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 5284270 - 5284170
Alignment:
Q  147 aaataatatcccatttccctttcaaattgcgtcttctgtcatgtcatatcttgtttcttttgatgtatcaagtaatagaatacatgaacttccatccttt 246  Q
    ||||||| |||||||||| ||||||||| | |||||||  ||||||| |||||||||||| |||||| | ||||||||||||||||||||| |||| |||    
T  5284270 aaataatctcccatttccatttcaaatttcttcttctgaaatgtcatctcttgtttctttagatgtaccgagtaatagaatacatgaactttcatctttt 5284171  T
Q  247 t 247  Q
    |    
T  5284170 t 5284170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 5284442 - 5284327
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||| |||||||||  ||||||||||||||| || || |||||||| ||||||||||||| ||| |||||||| | ||| |||||||||||  |||||||    
T  5284442 acttagaacagatgacatctttaaccactctgatagctaataacaccgcaataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatat 5284343  T
Q  115 ctctttgtgcggttat 130  Q
      ||||||||||||||    
T  5284342 tgctttgtgcggttat 5284327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 5278594 - 5278716
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||||||||| |||||||||||||| |||||  ||||||||||||||||||||||||||| ||| || ||  | | ||| || ||||||||  |||| ||    
T  5278594 acttggaacaaatggaatctttaactactctgcttgcaaataacactgcaataacaagagtgcccttgtctatagtaaggtcaaaaagcattggatacat 5278693  T
Q  115 ctctttgtgcggttatcaaggat 137  Q
    |||||||||||| ||| ||||||    
T  5278694 ctctttgtgcggctatgaaggat 5278716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 421 - 542
Target Start/End: Complemental strand, 5242895 - 5242774
Alignment:
Q  421 cagaatatggatgtcaatagtggtggtggtgatttgattcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaatttta 520  Q
    |||||||||||||  ||| |  ||||||||  |||| |||||||||| ||||||||||||||||| |||||   |||||||||||| ||||| | ||||     
T  5242895 cagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaaccttcgattctgaaggttcttctgttacttttg 5242796  T
Q  521 aagtccctgaagtggaagggcg 542  Q
    |||||||| |||||||||||||    
T  5242795 aagtccctcaagtggaagggcg 5242774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 5396980 - 5397100
Alignment:
Q  17 ttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatatct 116  Q
    ||||||||||||||||||||||||||  |  ||||||||||||||||||||| ||||| ||| |||||| ||  ||| |  ||||||||  ||| |||||    
T  5396980 ttggaacagatggaatctttaaccaccttggttgcaaataacactgcaataaaaagagtgccgttttcaattttaaggttaaaaagcattggatttatct 5397079  T
Q  117 ctttgtgcggttatcaaggat 137  Q
    |||||||||| ||| ||||||    
T  5397080 ctttgtgcggatatgaaggat 5397100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 5128470 - 5128359
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||||||||| |||||||| ||||| |||||  ||||||||||||||||||||| |||||  || |||||||| | ||| || ||||||||  |||||||    
T  5128470 acttggaacaaatggaatcattaacaactctgcttgcaaataacactgcaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatatat 5128371  T
Q  115 ctctttgtgcgg 126  Q
    |||| |||||||    
T  5128370 ctctctgtgcgg 5128359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 5447615 - 5447726
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||||||||||||||||||||||||||||||  |||||||||| ||| ||||||||| || ||| ||||| || |  || ||||| |||||  |||||||    
T  5447615 acttggaacagatggaatctttaaccactctgcttgcaaataatacttcaataacaacagtgcccttttcggtagttaggtcgaagagcattggatatat 5447714  T
Q  115 ctctttgtgcgg 126  Q
     |||||||||||    
T  5447715 ttctttgtgcgg 5447726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 619 - 776
Target Start/End: Complemental strand, 5133947 - 5133790
Alignment:
Q  619 gtttgggagcaaactatgggacaagtgtatttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctggaa 718  Q
    |||||||||| || | | || |||||| | ||||||||||||||| ||||||||||   ||||| ||||| |||||||||||||| |||||| || ||||    
T  5133947 gtttgggagcgaaattttggtcaagtggaattacaagaacaacttctgtttgatatcaacaaagaaatgacaactaagatacaaaacattgagtcaggaa 5133848  T
Q  719 aagtaattttaagggatagactccgccataaaaaagtgcttcttgttcttgatgatgt 776  Q
    ||   ||||||| |||||||||| | ||||||| |||  |  |||| |||||||||||    
T  5133847 aaaatattttaaaggatagactctggcataaaagagtattaattgtacttgatgatgt 5133790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 421 - 542
Target Start/End: Original strand, 5345941 - 5346062
Alignment:
Q  421 cagaatatggatgtcaatagtggtggtggtgatttgattcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaatttta 520  Q
    |||||||||||||  ||| |  ||||||||  |||| |||||||||| ||||||||||||||||| || || | |||||||||||| ||||| | ||||     
T  5345941 cagaatatggatgagaatgggagtggtggttgtttgcttcctggtgacagttatccagattggttaactttcaattctgaaggttcttctgttacttttg 5346040  T
Q  521 aagtccctgaagtggaagggcg 542  Q
    |||| ||| |||||||||||||    
T  5346041 aagttcctcaagtggaagggcg 5346062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 495 - 571
Target Start/End: Original strand, 2938898 - 2938974
Alignment:
Q  495 ttctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtct 571  Q
    ||||||| |||| ||||| || ||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||||    
T  2938898 ttctgaatgttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtct 2938974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 5102667 - 5102564
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||||||||| |||||||| |||||||||||  | ||||| |||||||||||||||| || ||| |||||||| | ||| || ||||||||  |||||||    
T  5102667 acttggaacaaatggaatcattaaccactcttctagcaaacaacactgcaataacaacagtgcccttttcagtagtaaggtcaaaaagcattggatatat 5102568  T
Q  115 ctct 118  Q
    ||||    
T  5102567 ctct 5102564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 5690212 - 5690101
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||||||||| ||||||||||||||||||||  |||||||| |||||| ||||||||| | ||| |||||| ||| ||| || ||||||||  | |||||    
T  5690212 acttggaacaaatggaatctttaaccactctgcttgcaaatgacactggaataacaagtgtgcccttttcaattgtaaggtcaaaaagcattgggtatat 5690113  T
Q  115 ctctttgtgcgg 126  Q
     ||| |||||||    
T  5690112 ttctctgtgcgg 5690101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 5181978 - 5181908
Alignment:
Q  17 ttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagt 87  Q
    |||||||| ||| |||||||||||||  | |||||||||||||||||||||||||||| ||| ||||||||    
T  5181978 ttggaacaaatgaaatctttaaccacattgattgcaaataacactgcaataacaagagtgccgttttcagt 5181908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 412 - 542
Target Start/End: Complemental strand, 5689295 - 5689165
Alignment:
Q  412 ttacttttgcagaatatggatgtcaatagtggtggtggtgatttgattcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctg 511  Q
    |||||||| |||||||||||||  ||| |  ||||||||  |||| ||||| ||||||||| |||||||||||| ||||| | ||  |||||||| || |    
T  5689295 ttacttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgcgaaggttcttcgg 5689196  T
Q  512 taaattttaaagtccctgaagtggaagggcg 542  Q
    |||  ||| |||||||| |||||||||||||    
T  5689195 taatgtttgaagtccctcaagtggaagggcg 5689165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 5066742 - 5066625
Alignment:
Q  20 gaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatatctctt 119  Q
    ||||| ||||||||||||||||||||  ||||| |||| |||||||||| ||||   || |||||||| | ||| || ||||||||  |||| |||||||    
T  5066742 gaacaaatggaatctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggtcaaaaagcattggatacatctctt 5066643  T
Q  120 tgtgcggttatcaaggat 137  Q
    ||||||| ||| ||||||    
T  5066642 tgtgcggctatgaaggat 5066625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 5157676 - 5157559
Alignment:
Q  20 gaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatatctctt 119  Q
    ||||||||||||||||||||||||||  ||||| |  |||||||||||| |||||  || |||||||| | ||| || ||||||||  |||| |||||||    
T  5157676 gaacagatggaatctttaaccactctgcttgcacacgacactgcaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatacatctctt 5157577  T
Q  120 tgtgcggttatcaaggat 137  Q
    || |||| ||| ||||||    
T  5157576 tgggcggctatgaaggat 5157559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 5350427 - 5350544
Alignment:
Q  20 gaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatatctctt 119  Q
    ||||| ||||||||||||||||||||  ||||| |||| |||||||||| ||||   || |||||||| | ||| || ||||||||  |||| |||||||    
T  5350427 gaacaaatggaatctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggtcaaaaagcattggatacatctctt 5350526  T
Q  120 tgtgcggttatcaaggat 137  Q
    ||||||| ||| ||||||    
T  5350527 tgtgcggctatgaaggat 5350544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 5425943 - 5426060
Alignment:
Q  20 gaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatatctctt 119  Q
    ||||| |||||||||||||||||||| |||||| |||| |||||||||| |||||  || |||||||| | ||  ||  |||||||  |||| |||||||    
T  5425943 gaacaaatggaatctttaaccactctgattgcacataaaactgcaataaaaagagtacccttttcagtggtaatgtcacaaagcattggatacatctctt 5426042  T
Q  120 tgtgcggttatcaaggat 137  Q
    ||||||| ||| ||||||    
T  5426043 tgtgcggctatgaaggat 5426060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 641 - 776
Target Start/End: Original strand, 5348393 - 5348528
Alignment:
Q  641 aagtgtatttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctggaaaagtaattttaagggatagact 740  Q
    ||||| |||||||| |||||||| ||||||| || | |||||  |||| ||| || ||||||||||||||    |||||| | || |||| |||||||||    
T  5348393 aagtgaatttacaaaaacaacttctgtttgacatctgcaaagatatgacaaccaatatacaaagcattgaaagcggaaaaatcatattaaaggatagact 5348492  T
Q  741 ccgccataaaaaagtgcttcttgttcttgatgatgt 776  Q
    | ||||||||| ||| ||  ||||||||||||||||    
T  5348493 ctgccataaaagagtactaattgttcttgatgatgt 5348528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 414 - 544
Target Start/End: Complemental strand, 5127019 - 5126889
Alignment:
Q  414 acttttgcagaatatggatgtcaatagtggtggtggtgatttgattcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgta 513  Q
    |||||| ||||||||||||| || | |  ||||||||  |||| |||||||||||||||||||| |||||||  |||| |  || |||||||| || |||    
T  5127019 acttttacagaatatggatgccagttggtgtggtggtagtttgcttcctggtgatagttatccatattggttagccttcaactccgaaggttcttcggta 5126920  T
Q  514 aattttaaagtccctgaagtggaagggcgta 544  Q
    | |||| |||| ||| ||||| |||||||||    
T  5126919 acttttgaagtacctcaagtgaaagggcgta 5126889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 415 - 540
Target Start/End: Original strand, 5177645 - 5177770
Alignment:
Q  415 cttttgcagaatatggatgtcaatagtggtggtggtgatttgattcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaa 514  Q
    ||||| |||||||||||||  ||| |  ||||||||  |||| ||||| ||||||||| |||||||||||| ||||| | ||  |||||||| || ||||    
T  5177645 cttttacagaatatggatgagaatgggtgtggtggttgtttgtttcctagtgatagttgtccagattggttaaccttcaattgcgaaggttcttcggtaa 5177744  T
Q  515 attttaaagtccctgaagtggaaggg 540  Q
      ||| |||||||| |||||||||||    
T  5177745 tgtttgaagtccctcaagtggaaggg 5177770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 640 - 749
Target Start/End: Original strand, 5276674 - 5276783
Alignment:
Q  640 caagtgtatttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctggaaaagtaattttaagggatagac 739  Q
    |||||| |||||||| |||||||| | | |||||| || ||||||| |   || ||||||||||| |||||||| ||||||||||| |||| ||||||||    
T  5276674 caagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtattgattcaggaaaagtaatattaaaggatagac 5276773  T
Q  740 tccgccataa 749  Q
    | || |||||    
T  5276774 ttcgtcataa 5276783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 648 - 776
Target Start/End: Complemental strand, 5075744 - 5075616
Alignment:
Q  648 tttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctggaaaagtaattttaagggatagactccgccat 747  Q
    |||||||||||||||| | |||||||||| |||||  | |||||||||||||| ||| ||||| || ||||||   || |||| |||||||||  | |||    
T  5075744 tttacaagaacaacttctttttgatatttgcaaagatacgaaaactaagatacgaagtattgagtcgggaaaaactatattaatggatagactatgtcat 5075645  T
Q  748 aaaaaagtgcttcttgttcttgatgatgt 776  Q
    |||| | | ||| |||| |||||||||||    
T  5075644 aaaagaattcttattgtacttgatgatgt 5075616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 5370604 - 5370652
Alignment:
Q  20 gaacagatggaatctttaaccactctaattgcaaataacactgcaataa 68  Q
    |||||||||||||| |||||||||||  |||||||||||||||||||||    
T  5370604 gaacagatggaatcattaaccactctgcttgcaaataacactgcaataa 5370652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 637 - 740
Target Start/End: Original strand, 5174844 - 5174947
Alignment:
Q  637 ggacaagtgtatttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctggaaaagtaattttaagggata 736  Q
    ||||||||| |||||||| |||||||| | | |||||| || ||||||| |   || ||||||||||| |||||||| ||||||||| | |||| |||||    
T  5174844 ggacaagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtattgattcaggaaaagtattattaaaggata 5174943  T
Q  737 gact 740  Q
    ||||    
T  5174944 gact 5174947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 308 - 375
Target Start/End: Complemental strand, 5181311 - 5181244
Alignment:
Q  308 tgatagtctgttgtatgaatccaagcaaatctttatttgtagggtcaaaatatgattaactaccttat 375  Q
    |||||||||||| ||||||||||||||||  ||| ||||||  |||||||||||||||| | ||||||    
T  5181311 tgatagtctgttttatgaatccaagcaaagatttctttgtaacgtcaaaatatgattaattgccttat 5181244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 5354667 - 5354608
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagag 74  Q
    ||||||||||  |||||||||||||||| ||  |||||||| ||||||||||||||||||    
T  5354667 acttggaacaattggaatctttaaccaccctgcttgcaaatgacactgcaataacaagag 5354608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 5281328 - 5281450
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||||||||| |||||||| ||||| || || ||||| ||| ||||||||||||||||||  || ||| |||| | ||| | ||||| |||  |||||||    
T  5281328 acttggaacaaatggaatccttaacgaccctgattgctaatgacactgcaataacaagagttccctttgcagtaggaaggttgaaaaacattggatatat 5281427  T
Q  115 ctctttgtgcggttatcaaggat 137  Q
     ||||| ||||| ||| ||||||    
T  5281428 ttctttctgcggctataaaggat 5281450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 5344889 - 5345011
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||| ||||| ||| |||||||||||| ||| || |||||||||||||||||||||| ||  || |||| ||| | ||| || ||||||||  |||||||    
T  5344889 acttagaacaaatgaaatctttaaccattctgatcgcaaataacactgcaataacaaaagttccctttttagtagtaaggtcaaaaagcattggatatat 5344988  T
Q  115 ctctttgtgcggttatcaaggat 137  Q
     ||| |||| || ||| ||||||    
T  5344989 ttctctgtgtggctatgaaggat 5345011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 375
Target Start/End: Complemental strand, 5101340 - 5101271
Alignment:
Q  306 actgatagtctgttgtatgaatccaagcaaatctttatttgtagggtcaaaatatgattaactaccttat 375  Q
    |||||||||  ||| ||||||||||||||||| ||| | ||||  |||||||||||||||| ||||||||    
T  5101340 actgatagttggttttatgaatccaagcaaatatttctctgtaacgtcaaaatatgattaattaccttat 5101271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 375
Target Start/End: Complemental strand, 5136441 - 5136372
Alignment:
Q  306 actgatagtctgttgtatgaatccaagcaaatctttatttgtagggtcaaaatatgattaactaccttat 375  Q
    |||||||||  ||| ||||||||||||||||| ||| | ||||  |||||||||||||||| ||||||||    
T  5136441 actgatagttggttttatgaatccaagcaaatatttctctgtaacgtcaaaatatgattaattaccttat 5136372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 647 - 776
Target Start/End: Original strand, 5341682 - 5341811
Alignment:
Q  647 atttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctggaaaagtaattttaagggatagactccgcca 746  Q
    |||||||||||| |||| | || ||||| | ||||| ||  | ||| |||||||||| |||||| || |||||||| || |||| |||||||||| | ||    
T  5341682 atttacaagaacgacttcttttcgatatctgcaaagaaacaacaacaaagatacaaaacattgagtcgggaaaagttatattaaaggatagactctgtca 5341781  T
Q  747 taaaaaagtgcttcttgttcttgatgatgt 776  Q
    ||| ||| | |||||||| || ||||||||    
T  5341782 taagaaaatacttcttgtactagatgatgt 5341811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 568
Target Start/End: Original strand, 5384148 - 5384253
Alignment:
Q  463 ggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgt 562  Q
    ||||||||||||||| | ||||| | ||| |  | ||| ||||| ||||||| |||||| | |||| ||||||||| || |||||| |||||| ||||||    
T  5384148 ggtgatagttatccaaactggttaagcttcaaatgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcataacttaaagtcattgatgt 5384247  T
Q  563 gcattg 568  Q
    ||||||    
T  5384248 gcattg 5384253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 5447196 - 5447241
Alignment:
Q  26 atggaatctttaaccactctaattgcaaataacactgcaataacaa 71  Q
    ||||||||||||||||||||  |||||||||||||| |||||||||    
T  5447196 atggaatctttaaccactcttcttgcaaataacacttcaataacaa 5447241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 421 - 540
Target Start/End: Original strand, 5279476 - 5279595
Alignment:
Q  421 cagaatatggatgtcaatagtggtggtggtgatttgattcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaatttta 520  Q
    |||||||||||||  ||| |  ||||||||  |||| ||||  ||||||||| |||||||||||| ||||| | ||  |||||||| || ||||  |||     
T  5279476 cagaatatggatgagaatgggtgtggtggttgtttgtttccaagtgatagttgtccagattggttaaccttcaattgcgaaggttcttcggtaatgtttg 5279575  T
Q  521 aagtccctgaagtggaaggg 540  Q
    |||||||| |||||||||||    
T  5279576 aagtccctcaagtggaaggg 5279595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 641 - 751
Target Start/End: Original strand, 5368442 - 5368552
Alignment:
Q  641 aagtgtatttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctggaaaagtaattttaagggatagact 740  Q
    ||||| ||||||||||||||||| | |||||||| | |||||  |||  ||| || || ||||||||||| |  |||||| | || |||| |||||||||    
T  5368442 aagtgaatttacaagaacaacttctctttgatatctgcaaagatatggcaaccaaaattcaaagcattgaatgcggaaaaatcatattaaaggatagact 5368541  T
Q  741 ccgccataaaa 751  Q
    | |||||||||    
T  5368542 ctgccataaaa 5368552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 5383359 - 5383413
Alignment:
Q  20 gaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagag 74  Q
    ||||| |||||||||||||| ||| |  ||||| |||||||||||||||||||||    
T  5383359 gaacaaatggaatctttaactactttgcttgcagataacactgcaataacaagag 5383413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 5096741 - 5096826
Alignment:
Q  20 gaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcat 105  Q
    ||||| |||||||| ||||||| |||  ||||||||||||||| ||||| |||||  || |||||||| | ||| || ||||||||    
T  5096741 gaacaaatggaatcattaaccattctgcttgcaaataacactggaataaaaagagtacccttttcagtagtaaggtcaaaaagcat 5096826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 710
Target Start/End: Original strand, 5395033 - 5395094
Alignment:
Q  649 ttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattga 710  Q
    |||||| |||||||| | |||||||||| ||||| || ||| ||||||||||||| ||||||    
T  5395033 ttacaaaaacaacttctctttgatatttgcaaagaaacgaagactaagatacaaaacattga 5395094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 710
Target Start/End: Original strand, 5423735 - 5423804
Alignment:
Q  641 aagtgtatttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattga 710  Q
    ||||| ||||||||||||||||| | |||||||| | |||||  |||| ||| || ||||||||||||||    
T  5423735 aagtgaatttacaagaacaacttctctttgatatatgcaaagatatgacaaccaaaatacaaagcattga 5423804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 647 - 716
Target Start/End: Original strand, 5431395 - 5431464
Alignment:
Q  647 atttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattgattctgg 716  Q
    ||||||||||||||||| | | |||||| |||| ||||| ||  || ||||||||||| |||||||||||    
T  5431395 atttacaagaacaacttctatctgatatcttcagaggaacgacgaccaagatacaaagtattgattctgg 5431464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 4e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 460 - 581
Target Start/End: Complemental strand, 47985734 - 47985613
Alignment:
Q  460 cctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatga 559  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||| || |||| |||| |||||||| |||||||| ||| |||||| ||| ||||||    
T  47985734 cctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaatga 47985635  T
Q  560 tgtgcattgtctgtacttcaac 581  Q
    |||||||||||| |||||||||    
T  47985634 tgtgcattgtctatacttcaac 47985613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 460 - 581
Target Start/End: Complemental strand, 47995021 - 47994900
Alignment:
Q  460 cctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatga 559  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||| || |||| |||| |||||||| |||||||| ||| |||||| ||| ||||||    
T  47995021 cctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaatga 47994922  T
Q  560 tgtgcattgtctgtacttcaac 581  Q
    |||||||||||| |||||||||    
T  47994921 tgtgcattgtctatacttcaac 47994900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 460 - 581
Target Start/End: Complemental strand, 48004308 - 48004187
Alignment:
Q  460 cctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatga 559  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||| || |||| |||| |||||||| |||||||| ||| |||||| ||| ||||||    
T  48004308 cctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaatga 48004209  T
Q  560 tgtgcattgtctgtacttcaac 581  Q
    |||||||||||| |||||||||    
T  48004208 tgtgcattgtctatacttcaac 48004187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 460 - 581
Target Start/End: Complemental strand, 48013593 - 48013472
Alignment:
Q  460 cctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatga 559  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||| || |||| |||| |||||||| |||||||| ||| |||||| ||| ||||||    
T  48013593 cctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaatga 48013494  T
Q  560 tgtgcattgtctgtacttcaac 581  Q
    |||||||||||| |||||||||    
T  48013493 tgtgcattgtctatacttcaac 48013472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 36213879 - 36213760
Alignment:
Q  18 tggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatatctc 117  Q
    |||||||||||||||||||||||||  | |||||||||||||||||||||||||||| |||||||||||| | |||||| |||||||||   ||||| ||    
T  36213879 tggaacagatggaatctttaaccaccttgattgcaaataacactgcaataacaagagtgccattttcagtagtaagatctaaaagcatcgcttatatatc 36213780  T
Q  118 tttgtgcggttatcaaggat 137  Q
    ||||||||| ||| ||||||    
T  36213779 tttgtgcggctatgaaggat 36213760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 8877637 - 8877759
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||| ||||||||| ||||||||||||||||  ||||||||||||||||||||| |||||  ||||||||| | | ||| || ||||||||  |||||||    
T  8877637 acttagaacagatgaaatctttaaccactctgcttgcaaataacactgcaataaaaagagtaccattttcattagtaaggtcaaaaagcattggatatat 8877736  T
Q  115 ctctttgtgcggttatcaaggat 137  Q
     ||||||||||| ||| ||||||    
T  8877737 ttctttgtgcggctatgaaggat 8877759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 463 - 581
Target Start/End: Original strand, 8879486 - 8879604
Alignment:
Q  463 ggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgt 562  Q
    ||||||| ||||||| ||||||| || || |||| ||||||| | | ||||| ||||||||| ||| |||| |||||| | ||||||||||| |||||||    
T  8879486 ggtgataattatccaaattggttaactttcagttgtgaaggtccttgtgtaacttttaaagttcctcaagttgaagggagaaacttgaagtcgatgatgt 8879585  T
Q  563 gcattgtctgtacttcaac 581  Q
    ||||||||| ||| |||||    
T  8879586 gcattgtctatacatcaac 8879604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 4344674 - 4344796
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||  || |||||||| | ||| || ||| ||||  ||| |||    
T  4344674 acttggaacaaatggaatctttaaccactctgattgcaaataacactgctataacaaaagtacccttttcagtagtaaggtcaaaacgcattggatttat 4344773  T
Q  115 ctctttgtgcggttatcaaggat 137  Q
     |||||||| || ||| ||||||    
T  4344774 ttctttgtgtggatatgaaggat 4344796  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 4361105 - 4361227
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||  ||||||| ||  || |||||| ||| |||||| ||| ||||  ||| |||    
T  4361105 acttggaacaaatggaatctttaaccactctgattgcaaataacactggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttat 4361204  T
Q  115 ctctttgtgcggttatcaaggat 137  Q
     |||||||| || ||| ||||||    
T  4361205 ttctttgtgtggatatgaaggat 4361227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 4133478 - 4133388
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcat 105  Q
    |||||||||| ||||| |||||||||||||| ||||   |||||||||||||||||| || ||| |||||||| ||||| || ||||||||    
T  4133478 acttggaacaaatggagtctttaaccactctgattgtggataacactgcaataacaaaagtgcccttttcagtcgcaaggtcaaaaagcat 4133388  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 4335373 - 4335495
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||||||||| |||||||||||||||||||| || ||| |||||||||  ||||||| || ||| |||||||| | ||  || ||||||||  | |||||    
T  4335373 acttggaacaaatggaatctttaaccactctcatggcagataacactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatat 4335472  T
Q  115 ctctttgtgcggttatcaaggat 137  Q
    ||||||||| || ||| ||||||    
T  4335473 ctctttgtgtgggtatgaaggat 4335495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 499 - 580
Target Start/End: Complemental strand, 4319604 - 4319523
Alignment:
Q  499 gaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtctgtacttcaa 580  Q
    |||||||| ||||||| |||| |||||||| |||||||||| |||| ||||||| |||| ||||||||||||| | ||||||    
T  4319604 gaaggttcttctgtaatttttgaagtccctcaagtggaaggacgtagcttgaagacaataatgtgcattgtctattcttcaa 4319523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 4123990 - 4123902
Alignment:
Q  17 ttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcat 105  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||| || ||| ||||| || | ||| || ||||||||    
T  4123990 ttggaacaaatggaatctttaaccactctgattgcaaataatactgctataacaaaagtgcccttttcggtagtaaggtcaaaaagcat 4123902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 638 - 710
Target Start/End: Original strand, 4330468 - 4330540
Alignment:
Q  638 gacaagtgtatttacaagaacaacttttgtttgatattttcaaaggaatgaaaactaagatacaaagcattga 710  Q
    ||||||| |||||||||||||||||| ||| |||||||||||||| ||| | ||| |||||||||| ||||||    
T  4330468 gacaagtctatttacaagaacaacttatgtatgatattttcaaagaaatcacaaccaagatacaaaacattga 4330540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 508 - 580
Target Start/End: Original strand, 4336904 - 4336976
Alignment:
Q  508 tctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtctgtacttcaa 580  Q
    |||||||||||| |||||||| | |||||||| |||| ||||||| |||||||||||||||||| | ||||||    
T  4336904 tctgtaaattttgaagtccctcatgtggaaggacgtagcttgaagacaatgatgtgcattgtctattcttcaa 4336976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 637 - 682
Target Start/End: Complemental strand, 4126461 - 4126416
Alignment:
Q  637 ggacaagtgtatttacaagaacaacttttgtttgatattttcaaag 682  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||    
T  4126461 ggacaagtgtatttacaagaacaacttatgtatgatattttcaaag 4126416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 516 - 571
Target Start/End: Complemental strand, 4122929 - 4122874
Alignment:
Q  516 ttttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtct 571  Q
    |||| |||||||| |||||||||| |||| ||||||| ||||||||||||||||||    
T  4122929 ttttgaagtccctcaagtggaaggacgtagcttgaagacaatgatgtgcattgtct 4122874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 637 - 682
Target Start/End: Original strand, 4342920 - 4342965
Alignment:
Q  637 ggacaagtgtatttacaagaacaacttttgtttgatattttcaaag 682  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||||    
T  4342920 ggacaagtgtatttacaagaacaacttatgcatgatattttcaaag 4342965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 4320672 - 4320616
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaa 71  Q
    |||||||||| ||||||||||||||||| || ||||||||||| ||||  |||||||    
T  4320672 acttggaacaaatggaatctttaaccaccctgattgcaaataatactggtataacaa 4320616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 508 - 580
Target Start/End: Original strand, 4362554 - 4362626
Alignment:
Q  508 tctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgtgcattgtctgtacttcaa 580  Q
    ||||||| |||| |||||||| ||||||||||  ||| ||||||| |||| ||||||||||||| | ||||||    
T  4362554 tctgtaatttttgaagtccctcaagtggaaggatgtagcttgaagacaataatgtgcattgtctattcttcaa 4362626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 6815498 - 6815603
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatat 114  Q
    |||||||||||||||||||||| |  ||  | |||||  |||| ||||| |||| || || |||||||||||| | ||||| |||||||||  |||||||    
T  6815498 acttggaacagatggaatctttgattaccttgattgctgataagactgctataaaaaaagtgccattttcagtggtaagattgaaaagcattggatatat 6815597  T
Q  115 ctcttt 120  Q
     |||||    
T  6815598 ttcttt 6815603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 8948 - 8842
Alignment:
Q  20 gaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttcagttgcaagatcgaaaagcatcagatatatctctt 119  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||| ||||||||| ||| |||||| | | ||| || ||||| ||   |||||| ||||    
T  8948 gaacagatggaatctttaaccactctgcttgcagataacactgcattaacaagagtgcccttttcaatagtaaggtcaaaaagtattgtatatatttctt 8849  T
Q  120 tgtgcgg 126  Q
    |||||||    
T  8848 tgtgcgg 8842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 463 - 568
Target Start/End: Complemental strand, 8212 - 8107
Alignment:
Q  463 ggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaagtcaatgatgt 562  Q
    ||||||||||||||| | ||||| | ||| | || ||| ||||| ||||||| |||||| | |||| ||||||||| || |||||| |||||| ||||||    
T  8212 ggtgatagttatccaaactggttaagcttcaattgtgatggttcttctgtaatttttaatgcccctcaagtggaagagcataacttaaagtcattgatgt 8113  T
Q  563 gcattg 568  Q
    ||||||    
T  8112 gcattg 8107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 453 - 581
Target Start/End: Complemental strand, 22583638 - 22583507
Alignment:
Q  453 tttgattcctggtgatagttatccagattggttgacctttagttctgaaggttcgtctgtaaattttaaagtccctgaagtggaagggcgtaacttgaag 552  Q
    |||| |||||||||||| ||||||| ||||||| | ||| | ||   ||||||| ||||||| |||||||||||||| |||| |||||||||  ||||||    
T  22583638 tttgcttcctggtgataattatccaaattggttaaacttcaattgccaaggttcttctgtaacttttaaagtccctgtagtgaaagggcgtatgttgaag 22583539  T
Q  553 tc---aatgatgtgcattgtctgtacttcaac 581  Q
    ||   |||||| |||||||||| | |||||||    
T  22583538 tcaataatgatctgcattgtctattcttcaac 22583507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 22584267 - 22584197
Alignment:
Q  15 acttggaacagatggaatctttaaccactctaattgcaaataacactgcaataacaagagcgccattttca 85  Q
    |||||||||| ||||||||||||||||||||  |||||||| | |||||||||| || || ||||||||||    
T  22584267 acttggaacaaatggaatctttaaccactctgcttgcaaatgaaactgcaataaaaaaagtgccattttca 22584197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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