View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16921_low_20 (Length: 400)

Name: NF16921_low_20
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16921_low_20
NF16921_low_20
[»] chr6 (7 HSPs)
chr6 (215-389)||(4435413-4435587)
chr6 (1-115)||(28057083-28057197)
chr6 (1-115)||(4435024-4435138)
chr6 (8-96)||(4091381-4091469)
chr6 (1-82)||(11178395-11178476)
chr6 (8-83)||(32444518-32444593)
chr6 (1-82)||(2314426-2314507)
[»] chr3 (2 HSPs)
chr3 (215-389)||(46595251-46595425)
chr3 (1-115)||(46595701-46595815)
[»] chr5 (5 HSPs)
chr5 (215-389)||(37719493-37719666)
chr5 (1-115)||(37719940-37720054)
chr5 (215-385)||(30440715-30440879)
chr5 (5-96)||(30441237-30441331)
chr5 (1-82)||(9263603-9263684)
[»] chr1 (4 HSPs)
chr1 (215-385)||(16961128-16961298)
chr1 (215-385)||(25868611-25868781)
chr1 (1-115)||(25867339-25867453)
chr1 (1-115)||(16961590-16961698)
[»] chr4 (2 HSPs)
chr4 (1-115)||(47520808-47520923)
chr4 (296-348)||(43045835-43045887)
[»] chr7 (1 HSPs)
chr7 (1-87)||(20389951-20390037)
[»] chr8 (2 HSPs)
chr8 (296-385)||(38016561-38016650)
chr8 (296-348)||(27277282-27277334)
[»] scaffold0007 (1 HSPs)
scaffold0007 (314-367)||(81770-81823)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 215 - 389
Target Start/End: Original strand, 4435413 - 4435587
Alignment:
Q  215 tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattcatctcgcatcaaatccaga 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4435413 tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagtgaacatattcatattcatctcgcatcaaatccaga 4435512  T
Q  315 tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacattgattttgctgacctaatttcat 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4435513 tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcat 4435587  T

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Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 28057083 - 28057197
Alignment:
Q  1 aacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28057083 aacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttctctatatgcattt 28057182  T
Q  101 aaagcattacatatt 115  Q
    |||||||||||||||    
T  28057183 aaagcattacatatt 28057197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 4435024 - 4435138
Alignment:
Q  1 aacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4435024 aacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgtcattttcaaatttcaaatcccttcactatatgcattt 4435123  T
Q  101 aaagcattacatatt 115  Q
    ||||| |||||||||    
T  4435124 aaagcgttacatatt 4435138  T

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Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 4091381 - 4091469
Alignment:
Q  8 aaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgc 96  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4091381 aaaaccctaatcctatgttttgagcgggaaaattttgttaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgc 4091469  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 11178395 - 11178476
Alignment:
Q  1 aacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatc 82  Q
    |||||| |||||||||||||||||||||||| |||||| |  ||||   ||||||||||||||||||||  |||||||||||    
T  11178395 aacatcaaaaaccctaatcctatgttttgagtgggaaactaatgctttaacctcacttaatgccatttttgaatttcaaatc 11178476  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 32444518 - 32444593
Alignment:
Q  8 aaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcc 83  Q
    ||||||||||||||| ||||||||||||||| |  ||||   ||||||||||||||||||||  ||||||||||||    
T  32444518 aaaaccctaatcctaagttttgagcgggaaactaatgctttaacctcacttaatgccatttttgaatttcaaatcc 32444593  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 2314507 - 2314426
Alignment:
Q  1 aacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatc 82  Q
    |||||| |||| |||||||||||||||||||||||||| |  ||||   |||| |||||||||||||||  |||||||||||    
T  2314507 aacatcaaaaatcctaatcctatgttttgagcgggaaactaatgctttaacctaacttaatgccattttttaatttcaaatc 2314426  T

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Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 215 - 389
Target Start/End: Complemental strand, 46595425 - 46595251
Alignment:
Q  215 tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattcatctcgcatcaaatccaga 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46595425 tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagtgaacatattcatattcatctcgcatcaaatccaga 46595326  T
Q  315 tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacattgattttgctgacctaatttcat 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46595325 tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcat 46595251  T

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Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 46595815 - 46595701
Alignment:
Q  1 aacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcattt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46595815 aacatctaaaaccctaatcctatgttttgagcaggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcattt 46595716  T
Q  101 aaagcattacatatt 115  Q
    |||||||||||||||    
T  46595715 aaagcattacatatt 46595701  T

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Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 215 - 389
Target Start/End: Complemental strand, 37719666 - 37719493
Alignment:
Q  215 tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattcatctcgcatcaaatccaga 314  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37719666 tcatcctcatcgactcaagctccggccatcttccataaaccaccacgagaccgtgagtcgagagtgaacatattcatattcatctcgcatcaaatccaga 37719567  T
Q  315 tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacattgattttgctgacctaatttcat 389  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37719566 tctcgaaatcctctgcatctcgatctgttggttttaa-ccatgaaaaaacattgattttgctgacctaatttcat 37719493  T

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Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 37720054 - 37719940
Alignment:
Q  1 aacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcattt 100  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  37720054 aacatctaaaaccctaatcctatattttgagcgggaagattttgctaatacctcacttaatgtcattttcaaatttcaaatcccttcactgtatgtattt 37719955  T
Q  101 aaagcattacatatt 115  Q
    |||||||||||||||    
T  37719954 aaagcattacatatt 37719940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 215 - 385
Target Start/End: Complemental strand, 30440879 - 30440715
Alignment:
Q  215 tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattcatctcgcatcaaatccaga 314  Q
    ||||| |||| | ||| |||||| |||||||| ||||||||||||| |||| ||||||||||| |||||||||||||      ||| |||||||||||||    
T  30440879 tcatcgtcattgcctctagctccagccaccttacgtaaaccaccacaagactgtgagttgagaatgaacatattcat------ctcacatcaaatccaga 30440786  T
Q  315 tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacattgattttgctgacctaatt 385  Q
    |||| ||||||||| ||||| ||| ||||||||||||||||||||||  ||||||||||||||||||||||    
T  30440785 tctcaaaatcctctacatctagatttgttggttttaacccatgaaaattcattgattttgctgacctaatt 30440715  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 30441331 - 30441237
Alignment:
Q  5 tctaaaaccctaatcctatgttttgagcgggaaaattttgctaatac---ctcacttaatgccattttcaaatttcaaatcccttcactatatgc 96  Q
    ||||||||||||| ||||  ||| |||||||||| |||||||||||    | || |||||||||||||||||||||||||| |||||||||||||    
T  30441331 tctaaaaccctaaacctagatttagagcgggaaacttttgctaataatatcacatttaatgccattttcaaatttcaaatctcttcactatatgc 30441237  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 9263684 - 9263603
Alignment:
Q  1 aacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatc 82  Q
    |||||| |||| |||||||||||||||||||||||||| |  ||||   |||| |||||||||||||||  |||||||||||    
T  9263684 aacatcaaaaatcctaatcctatgttttgagcgggaaactaatgctttaacctaacttaatgccatttttgaatttcaaatc 9263603  T

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Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 215 - 385
Target Start/End: Complemental strand, 16961298 - 16961128
Alignment:
Q  215 tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattcatctcgcatcaaatccaga 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  16961298 tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccatgagtcgagagtgaacatattcatattcatctcgcatcaaatccaga 16961199  T
Q  315 tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacattgattttgctgacctaatt 385  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16961198 tctcaaaatcctctgcatctcgatttgttggttttaacccatgaaaaaacattgattttgctgacctaatt 16961128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 215 - 385
Target Start/End: Original strand, 25868611 - 25868781
Alignment:
Q  215 tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattcatctcgcatcaaatccaga 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  25868611 tcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagagaacatattcatattcatctcgcatcaaatccaga 25868710  T
Q  315 tctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacattgattttgctgacctaatt 385  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  25868711 tctcgaaatcctctgcatctcaatatgttggttttaacccatgaaaaaacattgattttgctgacctaatt 25868781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 25867339 - 25867453
Alignment:
Q  1 aacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcattt 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25867339 aacatctaaaaccctaattctatgttttgagcgggaaaattttgctaatacctcacttaatgcctttttcaaatttcaaatcccttcactatatgcattt 25867438  T
Q  101 aaagcattacatatt 115  Q
    |||||||||||||||    
T  25867439 aaagcattacatatt 25867453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 16961698 - 16961590
Alignment:
Q  1 aacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatg-catt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| ||||    
T  16961698 aacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttc-------aaatcccttcactatatgccatt 16961606  T
Q  100 taaagcattacatatt 115  Q
    ||||||||||||||||    
T  16961605 taaagcattacatatt 16961590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 47520808 - 47520923
Alignment:
Q  1 aacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatg-catt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  47520808 aacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgtcattttcaaatttcaaatcccttcactatatgccatt 47520907  T
Q  100 taaagcattacatatt 115  Q
    ||||||||||||||||    
T  47520908 taaagcattacatatt 47520923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 43045887 - 43045835
Alignment:
Q  296 atctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttt 348  Q
    |||||||||||||||  ||| |||| ||| |||||||||||||||||||||||    
T  43045887 atctcgcatcaaatctggatatcgatatcatctgcatctcgatctgttggttt 43045835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 20389951 - 20390037
Alignment:
Q  1 aacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttc 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20389951 aacatctaaaaccctaatcctatgttttgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttc 20390037  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 385
Target Start/End: Complemental strand, 38016650 - 38016561
Alignment:
Q  296 atctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacattgattttgctgacctaatt 385  Q
    ||||| |||||||| |||||||  ||||| ||||||||| ||||||||||||| ||||||| |||| |||||||||||||| ||||||||    
T  38016650 atctcacatcaaattcagatcttaaaatcatctgcatcttgatctgttggtttcaacccattaaaatacattgattttgctcacctaatt 38016561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 27277334 - 27277282
Alignment:
Q  296 atctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttt 348  Q
    ||||| |||||||||  ||| ||||| || |||||||||||||||||||||||    
T  27277334 atctcacatcaaatctggatatcgaattcatctgcatctcgatctgttggttt 27277282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 81823 - 81770
Alignment:
Q  314 atctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaaaacatt 367  Q
    |||| |||||| ||| ||||||||||||||||||| |||||||||||| |||||    
T  81823 atcttgaaatcatctacatctcgatctgttggtttcaacccatgaaaacacatt 81770  T

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