View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16921_low_22 (Length: 327)
Name: NF16921_low_22
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16921_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 7132047 - 7131743
Alignment:
| Q |
8 |
aaattattctacctgctccaaaaggaagatattcaaaattattccctctaaaatcaatagtactaccttcaaatctctctggaataaacatctcagcatc |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7132047 |
aaattcttctacctgctccaaaaggaagatattcaaaattattccctctaaaatcaatagaactaccttcaaatctctctggattaaacatctcagcatc |
7131948 |
T |
|
| Q |
108 |
agtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7131947 |
agtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcat |
7131848 |
T |
|
| Q |
208 |
tctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaagttcttgaatatcattttcagatataa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7131847 |
tctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaagttcttgaatatcattttcagatataa |
7131748 |
T |
|
| Q |
308 |
tttct |
312 |
Q |
| |
|
||||| |
|
|
| T |
7131747 |
tttct |
7131743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 25 - 266
Target Start/End: Complemental strand, 7154524 - 7154283
Alignment:
| Q |
25 |
ccaaaaggaagatattcaaaattattccctctaaaatcaatagtactaccttcaaatctctctggaataaacatctcagcatcagtccaatattgaggat |
124 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||| | |||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
7154524 |
ccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaatattgtggat |
7154425 |
T |
|
| Q |
125 |
cccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgcattctctagggagtaataa |
224 |
Q |
| |
|
| ||||||| |||||| |||| ||||| |||||||| ||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||| ||||| |
|
|
| T |
7154424 |
ctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctctagggaccaataa |
7154325 |
T |
|
| Q |
225 |
aggagtaggtgagtgtaaccttaaggtctcttttatcactaa |
266 |
Q |
| |
|
||| | ||||| ||||||||| | || ||||| |||||||| |
|
|
| T |
7154324 |
aggtgaaggtgggtgtaacctcattgtttctttgatcactaa |
7154283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 76 - 271
Target Start/End: Complemental strand, 7141703 - 7141508
Alignment:
| Q |
76 |
tcaaatctctctggaataaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatat |
175 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| ||||||||| |||||| ||| | || ||||| |||| || | |||| |||| ||||||||||||| |
|
|
| T |
7141703 |
tcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcatttataaagactgtagtattttttggtatat |
7141604 |
T |
|
| Q |
176 |
cataaccatcaatgttggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaatttta |
271 |
Q |
| |
|
|||| ||||| || ||||||| ||| |||| ||| || | || ||||||| ||||| ||||||||| || || ||||| |||||||| |||| |
|
|
| T |
7141603 |
catacccatctattttggttagttctgtgctcaatcttggaaccaacaaaggagaaggtgggtgtaacctcaatgtttctttgatcactaacttta |
7141508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University