View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16921_low_23 (Length: 327)
Name: NF16921_low_23
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16921_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 254069 - 254364
Alignment:
| Q |
12 |
aagaagataactccagttgcagagaacaaaatgctaatagtcggcgttccatacttagacctagaaagtttatagtaccacatcaatgttagatcactgt |
111 |
Q |
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| T |
254069 |
aagaagataactccagttgcagagaacaaaatgctaatagtcggcgttccatacttagacctagaaagtttatagtaccacatcaatgttagatcactgt |
254168 |
T |
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| Q |
112 |
tacctttttgttcaagcaattaatatcaaatttgaaagtactaatctaccactctcacttaagactaaatggtaggtaatgcatccactacaaatcccct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| |
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| T |
254169 |
tacctttttgttcaagcaattaatatcaaatttgaaagtactaatctaccactctcacttaagactaaatggtaggtactacatccaatacaaatcccct |
254268 |
T |
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| Q |
212 |
ttaagaatgaagtttcaaatcttccatctatttttcaaaacagataaccttgttgcttacatacaatctaattaaaagaaagagggtatcatcaat |
307 |
Q |
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| T |
254269 |
ttaagaatgaagtttcaaatcttccatctatttttcaaaacagataaccttgttgcttacatacaatctaattaaaagaaagagggtatcatcaat |
254364 |
T |
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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 21243602 - 21243660
Alignment:
| Q |
236 |
catctatttttcaaaacagataaccttgttgcttacatacaatctaattaaaagaaaga |
294 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21243602 |
catctattttccaaaacagataaccttgttgcttatatacaatctaattaaaagaaaga |
21243660 |
T |
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