View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16921_low_26 (Length: 301)
Name: NF16921_low_26
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16921_low_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 285
Target Start/End: Complemental strand, 41547304 - 41547029
Alignment:
| Q |
10 |
catcatcaggtatggaattgagttcaatatgtgtgatcaaataaatgtttggttagattgctaggtaggtagcttggcctggaacgtgattttcctgttt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41547304 |
catcatcaggtatggaattgagttcaatatgtgtgatcaaataaatgtttggttagattgctaggtaggtagcttggcctggaacgtgattttcctgttt |
41547205 |
T |
|
| Q |
110 |
tattgaagcatgtagtaggcagtattttataatttctttgaacttgtgaggctactagtaatggaacaagacctcattgatgaaatcatatatactccaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41547204 |
tattgaagcatgtagtaggcagtattttataatttctttgaacttgtgaggctactagtaatggaacaagacctcattgatgaaatcatatatactccaa |
41547105 |
T |
|
| Q |
210 |
ggttaaattagtaagtggtccctataatttctttacactatattgatattgtatgtatactttaagcacaccttat |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41547104 |
ggttaaattagtaagtggtccctataatttctttacactatattgatattgtatgtatactttaagcacaccttat |
41547029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University