View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16921_low_29 (Length: 251)
Name: NF16921_low_29
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16921_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 14414523 - 14414297
Alignment:
| Q |
10 |
gcacagacacaatagcattttcagttaacgaaggaatgttcctttccggattacctcgtacagctccccttggaggccgtagagatgcgctctattccct |
109 |
Q |
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| T |
14414523 |
gcacagacacaatagcattttcagttaacgaaggaatgttcctttccggattacctcgtacagctccccttggaggccgtagagatgcgctctattccct |
14414424 |
T |
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| Q |
110 |
agcatctattgcggaagacgacaaccttccaatgcctaattggccgatggaaaaaatggttgacctctttacnnnnnnnggtttcacaattgaagaaatg |
209 |
Q |
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| T |
14414423 |
agcatctatcgcggaagacgacaaccttccaatgcctaattggccgatggaaaaaatggttgacctcttcacaaaaaaaggtttcacaattgaagaaatg |
14414324 |
T |
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| Q |
210 |
gttattttacttggtgcgcattcaatt |
236 |
Q |
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| T |
14414323 |
gttattttacttggtgcgcattcaatt |
14414297 |
T |
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