View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16921_low_31 (Length: 247)
Name: NF16921_low_31
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16921_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 30338474 - 30338686
Alignment:
| Q |
1 |
ttttcgtcaattggtaattggaagtctttcccctatatatatggagaagatagaagagggaatgggagaaagaagagggaacacagagcatgtgggttgt |
100 |
Q |
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| T |
30338474 |
ttttcgtcaattggtaattggaagtctttcccttatatatatggagaagatagaaaaggg-------------------aacacagagcatgtgggttgt |
30338554 |
T |
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| Q |
101 |
ttgtttatgttcttcttcttctctgattgctatcaattaccccagctgatcaattgctatcaattattatcctcaggtcatttttcttctgaaaacaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30338555 |
ttgtttatgttcttcttcttctctgattgctatcaattaccccagctgatcaattgctatcaattattatcctcaggtaatttttcttctgaaaacaaac |
30338654 |
T |
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| Q |
201 |
aactgatcaattgagtttgtttctgtttcttt |
232 |
Q |
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|||||||||||||||||||| ||||||||||| |
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| T |
30338655 |
aactgatcaattgagtttgtctctgtttcttt |
30338686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 23915484 - 23915733
Alignment:
| Q |
1 |
ttttcgtcaattggtaattggaagtctttcccctatatatatggagaagatagaagag-------ggaatgggagaaagaa---------------gagg |
78 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
23915484 |
ttttcgtcaattggtaattggaagtctttccc--atatatatggagaagatagaagagagaagagggaatgggagaaagaagagggaacgagagaagagg |
23915581 |
T |
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| Q |
79 |
gaacacagagcatgtgggttgtttgtttatgttcttcttcttctctgattgctatcaattaccccagctgatcaattgctatcaattattatcctcaggt |
178 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23915582 |
gaacacagagcatgtgggttgtttgtttctgttcttcttcttctccgattgctatcaattaccccaactgatcaattgctatcaattattatcctcaggt |
23915681 |
T |
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| Q |
179 |
catttttcttctgaaaacaaacaactgatcaattgagtttgtttctgtttct |
230 |
Q |
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| T |
23915682 |
aatttttcttctgaaaacaaacaactgatcaattgagtttgtttctgtttct |
23915733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 18990038 - 18989789
Alignment:
| Q |
1 |
ttttcgtcaattggtaattggaagtctttcccctatatatatggagaagatagaagag-------ggaatgggagaaagaagagggaac----------- |
82 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18990038 |
ttttcgtcaattggtaattggaagtctttccc--atatatatggagaagatagaagagagaagagggaatgggagaaagaagagggaacgagagaagagg |
18989941 |
T |
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| Q |
83 |
----acagagcatgtgggttgtttgtttatgttcttcttcttctctgattgctatcaattaccccagctgatcaattgctatcaattattatcctcaggt |
178 |
Q |
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|||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18989940 |
gaacacagagcatgtgggttgtttgtgtctgttcttcttcttctccgattgctatcaattaccccaactgatcaattgctatcaattattatcctcaggt |
18989841 |
T |
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| Q |
179 |
catttttcttctgaaaacaaacaactgatcaattgagtttgtttctgtttct |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18989840 |
aatttttcttctgaaaacaaacaactgatcaattgagtttgtttctgtttct |
18989789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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