View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16921_low_34 (Length: 238)

Name: NF16921_low_34
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16921_low_34
NF16921_low_34
[»] chr6 (2 HSPs)
chr6 (133-230)||(24197358-24197455)
chr6 (39-78)||(24197264-24197303)
[»] chr3 (2 HSPs)
chr3 (150-230)||(47697454-47697534)
chr3 (39-76)||(47696885-47696922)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 24197358 - 24197455
Alignment:
Q  133 gcacaagaatgtttgttttagtctatgacaccacgtgtcataaccaagttgtgagaggagtatataatataggctagaacacccattgtactctctaa 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  24197358 gcacaagaatgtttgttttagtctatgacaccacgtgtcataaccaagttctaagaggagtatataatataggctagaacacccattgtactctctaa 24197455  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 24197264 - 24197303
Alignment:
Q  39 ataaattattttagaacgaatactatgttaattatgtagt 78  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24197264 ataaattattttagaacgaatactatgttaattatgtagt 24197303  T

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Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 47697454 - 47697534
Alignment:
Q  150 ttagtctatgacaccacgtgtcataaccaagttgtgagaggagtatataatataggctagaacacccattgtactctctaa 230  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||    
T  47697454 ttagtctatgacaccacgtgtcataaccaagttctgagaggagtgtataatataggctagaatacccattgtactctctaa 47697534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 47696885 - 47696922
Alignment:
Q  39 ataaattattttagaacgaatactatgttaattatgta 76  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47696885 ataaattattttagaacgaatactatgttaattatgta 47696922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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