View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16921_low_38 (Length: 211)
Name: NF16921_low_38
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16921_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 53499004 - 53498819
Alignment:
| Q |
14 |
aagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgtcctgttgt |
113 |
Q |
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| T |
53499004 |
aagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgtcctgttgt |
53498905 |
T |
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| Q |
114 |
tgctcttatattctcacatgtcattttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
199 |
Q |
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| T |
53498904 |
tgctcttatattctcacatgtcattttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
53498819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 53491408 - 53491223
Alignment:
| Q |
16 |
gaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgtcctgttgttg |
115 |
Q |
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| T |
53491408 |
gaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttg |
53491309 |
T |
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| Q |
116 |
ctcttatattct--cacatgtcattttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
199 |
Q |
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| T |
53491308 |
ctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
53491223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 16070087 - 16069999
Alignment:
| Q |
17 |
aagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgt |
105 |
Q |
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| T |
16070087 |
aagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaatgttgt |
16069999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
22 |
ttctgaatgggaaatgaaaggcgtccctctaaggattga |
60 |
Q |
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| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 45355367 - 45355440
Alignment:
| Q |
20 |
tattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggt |
93 |
Q |
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| T |
45355367 |
tattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcaggt |
45355440 |
T |
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