View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16921_low_4 (Length: 620)
Name: NF16921_low_4
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16921_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 607
Target Start/End: Complemental strand, 48430879 - 48430282
Alignment:
| Q |
1 |
tctttatgcatatttttattctttgatatcgattttttaaaccagcaggtggctgggactgggagtaaagcattgctgactatcctggctagagttaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48430879 |
tctttatgcatatttttattctttgatatcgattttttaaaccagcaggtggctggga------gtaaagcattgctgactatcctggctagagttaagg |
48430786 |
T |
|
| Q |
101 |
aggagaaacctcatgttcgattcacaaaggaatttgttctagttctctttctatatcatagtctttgtaacctgggttgtaggcgtttccaaattgatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48430785 |
aggagaaacctcatgttcgattcacaaaggaattcgttctagttctctttctatatcatagtctttgtaacctgggttgtacgcgtttccaaattga--- |
48430689 |
T |
|
| Q |
201 |
agaagagtaggcaagtttttctggaaatcttaacaaagtttatggagctttatcaatgcttttgattcaattttctctgtgcatatttgaattcttcaac |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48430688 |
agaagagcaggcaagtttttctggaaatcttaacaaagtttatggagctttatcaatgcttttgattcaattttctctgtgcatatttgaattcttcaac |
48430589 |
T |
|
| Q |
301 |
atcaacaggtggccaggggaaaggcaattttggctagtgcaagggaacttgaggatgaattatttggagagatgcaaacagttggaggctgagttacata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48430588 |
atcaacaggtggccaggggaaaggcaattttggctagtgcaagggaacttgaggctgaattatttggagagatgcaaacagttggaggctgagttacatg |
48430489 |
T |
|
| Q |
401 |
aagggtgtcagaatagtcaactgatggggtcgtttgccaatgcattttacacaggagctcccaccgtgaaccccgttgtcttctttccttcattagtata |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48430488 |
aagggtgtcagaatagtcaactgatggggtcgtttaccaatgcattttacacaggagctcccaccgtgaaccccgtcgtcttctttccttcattagtata |
48430389 |
T |
|
| Q |
501 |
ttttannnnnnnataactcctattagtttttagatgtcccatttaaaggactgttcatacactcttgttcaaaaaaggtctgttcatacactgctttgtg |
600 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48430388 |
ttttatttttttataactcctattggtttttagatgtcccatttaaaggactgttcatacactcttgttcaaaaaaggtctgttcatacactgctttgtg |
48430289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 23627495 - 23627589
Alignment:
| Q |
73 |
ttgctgactatcctggctagagttaaggaggagaaacctcatgttcgattcacaaaggaatttgttctagttctctttctatatcatagtctttg |
167 |
Q |
| |
|
||||| ||||||||| ||||||||| |||||||| ||| |||| ||||||| |||| || |||||||||||||| | |||||||||||||| |
|
|
| T |
23627495 |
ttgcttactatcctgactagagttatggaggagactccttcagttccattcacacaggagttcattctagttctctttatgtatcatagtctttg |
23627589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 270
Target Start/End: Complemental strand, 52805821 - 52805622
Alignment:
| Q |
73 |
ttgctgactatcctggctagagttaaggaggagaaacctcatgttcgattcacaaaggaatttgttctagttctctttctatatcatagtctttgtaacc |
172 |
Q |
| |
|
||||| |||||||| ||||||||| |||||||| ||| |||||||| || | ||||| |||||||||||||||| |||||||||||||| | || |
|
|
| T |
52805821 |
ttgcttactatcctaactagagttatggaggagactccttccgttcgatttgcacaagaattccttctagttctctttctgtatcatagtctttgca-cc |
52805723 |
T |
|
| Q |
173 |
tgggtt-gtaggcgtttccaaattgatgaagaagagtaggcaagttt-ttctggaaatcttaacaaagtttatggagc-tttatcaatgcttttgattca |
269 |
Q |
| |
|
||| || ||| | | || ||||| ||||||| ||||||||| ||||| ||||||||||||||| |||| ||| |||| |||||||||||||||| |
|
|
| T |
52805722 |
tggttttgtactcatgaagaatttgatcaagaagacacggcaagtttcttctgcaaatcttaacaaagtctatgtagcctttagcaatgcttttgattca |
52805623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 34114494 - 34114528
Alignment:
| Q |
209 |
aggcaagtttttctggaaatcttaacaaagtttat |
243 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
34114494 |
aggcaagtttttctggaaatgttaacaaagtttat |
34114528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 34148677 - 34148710
Alignment:
| Q |
209 |
aggcaagtttttctggaaatcttaacaaagttta |
242 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
34148677 |
aggcaagtttttctggaaatgttaacaaagttta |
34148710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 34161293 - 34161326
Alignment:
| Q |
209 |
aggcaagtttttctggaaatcttaacaaagttta |
242 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
34161293 |
aggcaagtttttctggaaatgttaacaaagttta |
34161326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University