View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16921_low_40 (Length: 210)
Name: NF16921_low_40
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16921_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 31374990 - 31375169
Alignment:
| Q |
16 |
aaaggaaagcacgtgaggttagaaacaaggcaattgggctttgacccaagggtgatggttgacccgaggccacaagttggaacaaaaggaaaacggcact |
115 |
Q |
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| T |
31374990 |
aaagggaagcacgtgaggttagaaacaaggaaattgggctttgacccaagggtgatggttgacccgaggccacaagttggaacaaaaggaaaacggcact |
31375089 |
T |
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| Q |
116 |
ttagaatagggaaggggatatataaagccaactgcacaacacataaggaggatctgattttcg--gaaaaggacggttttg |
194 |
Q |
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| T |
31375090 |
ttagaatatagaaggggatatataaagccagctgcacaacacataagga-gatctgattttcggtgaaaaggacggttttg |
31375169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 18971338 - 18971156
Alignment:
| Q |
16 |
aaaggaaagcacgtgaggttagaaacaaggcaattgggctttgacccaagggtgatggttgacccgaggccacaagttggaacaaaaggaaaacggcact |
115 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | |||| |
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| T |
18971338 |
aaagggaagcacgtgaggttagaaacaaggcaattgggctttgacccaaaagtgatgtttgacccgaggccacaagttggaacaaaaggaaaatgacact |
18971239 |
T |
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| Q |
116 |
ttagaatagggaaggggatatataaagccaactgcacaacacataa--ggaggatctgattttcg--gaaaaggacggttttg |
194 |
Q |
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| T |
18971238 |
ttagaatatagaaggatatatataaagccagctgcacaacacataaggggaggatctgattttcggtgaaaaggacggttttg |
18971156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 18974505 - 18974323
Alignment:
| Q |
16 |
aaaggaaagcacgtgaggttagaaacaaggcaattgggctttgacccaagggtgatggttgacccgaggccacaagttggaacaaaaggaaaacggcact |
115 |
Q |
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| T |
18974505 |
aaagggaagcacgtgaggttagaaacaaggcaattgggcttcgacccaaaagtgatggttgacccgaggctacaagttggaacaaaaggaaaacgacact |
18974406 |
T |
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| Q |
116 |
ttagaatagggaaggggatatataaagccaactgcacaacacataa--ggaggatctgattttcg--gaaaaggacggttttg |
194 |
Q |
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| T |
18974405 |
ttagaatatagaaggatatatataaagccagctgcacaacacataaggggaggatctgattttcggtgaaaaggacggttttg |
18974323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 17545578 - 17545393
Alignment:
| Q |
16 |
aaaggaaagcacgtgaggttagaaacaaggcaattgggctttgacccaagggtgat--ggttgacccgaggccacaagttggaacaaaaggaaaacggca |
113 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| || |
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| T |
17545578 |
aaagggaagcacgtgaggtaagaaacaaggcaattgggctttgacccaagggtgatatggttgacccgaggccacaagttagaataaaaggaaaacgaca |
17545479 |
T |
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| Q |
114 |
ctttagaatagggaaggggata--tataaagccaactgcacaacacataa--ggaggatctgattttcgg-aaaaggacggttttg |
194 |
Q |
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|||||||||| |||||||||| |||||||||| ||||||||||||||| |||| ||| ||||||||| |||||||||||||| |
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| T |
17545478 |
ctttagaatatagaaggggatatatataaagccagctgcacaacacataaggggagaatcggattttcggtgaaaggacggttttg |
17545393 |
T |
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