View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16921_low_41 (Length: 205)

Name: NF16921_low_41
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16921_low_41
NF16921_low_41
[»] chr7 (1 HSPs)
chr7 (16-195)||(11843542-11843721)
[»] chr6 (4 HSPs)
chr6 (104-168)||(21303431-21303495)
chr6 (7-89)||(21156918-21156999)
chr6 (9-90)||(21259916-21259997)
chr6 (7-91)||(21246119-21246202)
[»] scaffold0076 (2 HSPs)
scaffold0076 (7-94)||(17457-17543)
scaffold0076 (7-61)||(12602-12656)
[»] scaffold0060 (1 HSPs)
scaffold0060 (17-87)||(10590-10659)
[»] chr5 (1 HSPs)
chr5 (17-94)||(21638576-21638652)
[»] scaffold0272 (1 HSPs)
scaffold0272 (7-40)||(8048-8081)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 11843542 - 11843721
Alignment:
Q  16 taaatcttcctcttgattgtttaagaatctttcatgtgggactattgaaaccaaaactatttaatatgtcttgttcttcttactgttctaaataattgtt 115  Q
    ||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11843542 taaatcttcctcttgattgtttaagaatcttccatgtgggaatactgaaaccaaaactatttaatatgtcttgttcttcttactgttctaaataattgtt 11843641  T
Q  116 atttagaaggatgcctaagaacaaataatgaacccgtcatgactactgaccaatcaataaaaatatgtggctgatgatgt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11843642 atttagaaggatgcctaagaacaaataatgaacccgtcatgactactgaccaatcaataaaaatatgtggctgatgatgt 11843721  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 21303431 - 21303495
Alignment:
Q  104 taaataattgttatttagaaggatgcctaagaacaaataatgaacccgtcatgactactgaccaa 168  Q
    ||||||||||||||| ||||||||| || ||| |||||||||| ||||||||||||| |||||||    
T  21303431 taaataattgttattaagaaggatgtctgagagcaaataatgagcccgtcatgactaatgaccaa 21303495  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 21156918 - 21156999
Alignment:
Q  7 ttttatagataaatcttcctcttgattgtttaagaatctttcatgtgggactattgaaaccaaaactatttaatatgtcttgt 89  Q
    |||||||| ||| ||||||||||| |||||| ||||||||  ||||||||||||| ||||| ||||||||  |||||||||||    
T  21156918 ttttataggtaattcttcctcttggttgttttagaatcttcgatgtgggactatttaaacc-aaactattctatatgtcttgt 21156999  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 21259916 - 21259997
Alignment:
Q  9 ttatagataaatcttcctcttgattgttt-aagaatctttcatgtgggactattgaaaccaaaactatttaatatgtcttgtt 90  Q
    |||||| ||||||||| |||||||| ||| ||||| |||| ||||||||||||   |||| ||||||||| ||||||||||||    
T  21259916 ttataggtaaatcttcttcttgattcttttaagaaactttgatgtgggactatcataacc-aaactattttatatgtcttgtt 21259997  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 21246202 - 21246119
Alignment:
Q  7 ttttatagataaatcttcctcttgattgtttaagaatctttcatgtgggactattgaaaccaaaactatttaatatgtcttgttc 91  Q
    |||| ||| ||||||||||||||  ||||||||||| ||   ||||||||||||   |||| ||||||||| |||||||||||||    
T  21246202 ttttgtaggtaaatcttcctcttagttgtttaagaacctccaatgtgggactatcataacc-aaactattttatatgtcttgttc 21246119  T

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Target: scaffold0076 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 17457 - 17543
Alignment:
Q  7 ttttatagataaatcttcctcttgattgtttaagaatctttcatgtgggactattgaaaccaaaactatttaatatgtcttgttcttc 94  Q
    |||||||| ||||||||||||| | || ||||||||||||  |||||||||||||  |||| || |||||| ||||||||||||||||    
T  17457 ttttataggtaaatcttcctctcggttctttaagaatcttcgatgtgggactattataacc-aagctatttcatatgtcttgttcttc 17543  T

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Target: scaffold0076; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 12602 - 12656
Alignment:
Q  7 ttttatagataaatcttcctcttgattgtttaagaatctttcatgtgggactatt 61  Q
    |||||||  ||||||||||||||||||||||||| | | | ||||||||||||||    
T  12602 ttttataagtaaatcttcctcttgattgtttaagcaccatccatgtgggactatt 12656  T

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Target: scaffold0060 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 10659 - 10590
Alignment:
Q  17 aaatcttcctcttgattgtttaagaatctttc-atgtgggactattgaaaccaaaactatttaatatgtctt 87  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||| ||||| ||||||||| ||| |||||    
T  10659 aaatcttcctcttgtttgtttaagaa-ctttcgatgtgggactattcaaacc-aaactattttatacgtctt 10590  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 21638652 - 21638576
Alignment:
Q  17 aaatcttcctcttgattgtttaagaatctttc-atgtgggactattgaaaccaaaactatttaatatgtcttgttcttc 94  Q
    |||||||||||| | ||| ||||||| ||||| ||||||||||||| ||||| ||||||||| ||||||||| ||||||    
T  21638652 aaatcttcctctaggttggttaagaa-ctttcgatgtgggactattcaaacc-aaactattttatatgtcttattcttc 21638576  T

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Target: scaffold0272 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 8081 - 8048
Alignment:
Q  7 ttttatagataaatcttcctcttgattgtttaag 40  Q
    |||||||| |||||||||||||||||||||||||    
T  8081 ttttataggtaaatcttcctcttgattgtttaag 8048  T

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