View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16921_low_5 (Length: 582)
Name: NF16921_low_5
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16921_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 19 - 566
Target Start/End: Original strand, 3603508 - 3604057
Alignment:
| Q |
19 |
aatagtcaatagtatagatcatgtcataggttatattcattgctcacttcaatcggacatcgcaagcaatttgatattttatgtacgcttaatagagtca |
118 |
Q |
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| T |
3603508 |
aatagtcaatagtatagatcatgtcataggttatattcattgctcacttcactcggacatcgcaagcaatttgatattttatgtacgcttaatagagtca |
3603607 |
T |
|
| Q |
119 |
ttcataaatctnnnnnnntatttgagaccctaatatttttagaagcccaatcatcaaggatgcctctgagatctgtcccaagaaattacactaattgttc |
218 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3603608 |
ttcataaatctaaaaaaatatttgagaccctaatatttttagaagcccaatcatcaaggatgcctctgagatctgtcccaagaaattacactaattgttc |
3603707 |
T |
|
| Q |
219 |
aacagtagaatttttaaattagattgtgtaggtaatc--tctaaatatgaataatataatgtgttgcagattgtattagatacgattaggttacttagat |
316 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3603708 |
aacagtagcatttttaaattagattgtgtaggtaatcagtctaaatatgaataatataatgtgttgcagattgtattagatacgattaggttacttagat |
3603807 |
T |
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| Q |
317 |
attctatcaaaatagggatatgcattacttattgttttttaaactcaaccagctatgcatatgatttgtcgtttcccttcttttgacactgtcttctcca |
416 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3603808 |
attctatcaaaataggtatatgcattacttattgttttttaaactcaaccagctatgcatatgatttgtcgtttcccttcttttgacactgtcttctcca |
3603907 |
T |
|
| Q |
417 |
ttattctacagcgggcattgcctttgaatgattccttgcacgtacagttatgcaagttcttgaatcttgatagagggtgtttttaagcctatattcagaa |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3603908 |
ttattctacagcgggcattgcctttgaatgattccttgcacgtacagttatgcaagttcttgaatcttgatagagagtgtttttaagcctatattcagaa |
3604007 |
T |
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| Q |
517 |
gttacaaatgatatgcatatacaacttcacaaatatcttccatctacttc |
566 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3604008 |
gttacaaatgatatgcatatacaacttcacaaatatcttccatctacttc |
3604057 |
T |
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