View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16921_low_8 (Length: 522)

Name: NF16921_low_8
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16921_low_8
NF16921_low_8
[»] chr3 (54 HSPs)
chr3 (12-219)||(6110064-6110271)
chr3 (12-219)||(10572592-10572799)
chr3 (12-219)||(15600884-15601091)
chr3 (12-219)||(15607429-15607636)
chr3 (12-216)||(13211305-13211509)
chr3 (12-219)||(13248607-13248814)
chr3 (12-217)||(16482483-16482688)
chr3 (12-213)||(17781118-17781319)
chr3 (12-213)||(10579355-10579556)
chr3 (12-217)||(18522665-18522870)
chr3 (12-219)||(15357586-15357793)
chr3 (12-219)||(8490488-8490702)
chr3 (12-217)||(18519980-18520182)
chr3 (12-213)||(19089745-19089946)
chr3 (12-217)||(17200184-17200389)
chr3 (12-200)||(15342219-15342407)
chr3 (12-217)||(13516813-13517018)
chr3 (58-219)||(18640792-18640953)
chr3 (12-213)||(32056900-32057101)
chr3 (12-213)||(1647521-1647726)
chr3 (31-217)||(16200128-16200313)
chr3 (27-219)||(29924971-29925163)
chr3 (27-219)||(29974124-29974316)
chr3 (31-217)||(16200434-16200619)
chr3 (12-212)||(24253388-24253589)
chr3 (12-113)||(17136465-17136566)
chr3 (155-217)||(18534758-18534820)
chr3 (255-312)||(6109971-6110028)
chr3 (255-312)||(13248514-13248571)
chr3 (255-311)||(8490396-8490452)
chr3 (255-313)||(13211209-13211267)
chr3 (255-311)||(18640989-18641045)
chr3 (255-311)||(17136137-17136193)
chr3 (261-311)||(10579603-10579653)
chr3 (255-312)||(15607672-15607730)
chr3 (255-312)||(15351237-15351294)
chr3 (255-312)||(15357829-15357886)
chr3 (255-312)||(17200427-17200484)
chr3 (172-217)||(18510924-18510969)
chr3 (255-311)||(16482727-16482782)
chr3 (255-311)||(18519885-18519941)
chr3 (261-312)||(10572840-10572891)
chr3 (255-313)||(13516717-13516775)
chr3 (255-312)||(15601127-15601185)
chr3 (255-312)||(17781358-17781415)
chr3 (255-312)||(19089985-19090042)
chr3 (255-311)||(1647768-1647824)
chr3 (255-311)||(32057144-32057200)
chr3 (352-455)||(23046330-23046433)
chr3 (255-312)||(18510828-18510885)
chr3 (255-312)||(18522569-18522626)
chr3 (255-312)||(18534662-18534719)
chr3 (255-311)||(29924879-29924935)
chr3 (255-311)||(29974032-29974088)
[»] scaffold0234 (4 HSPs)
scaffold0234 (12-219)||(2321-2528)
scaffold0234 (12-219)||(11212-11419)
scaffold0234 (255-312)||(2564-2621)
scaffold0234 (255-312)||(11455-11512)
[»] chr4 (49 HSPs)
chr4 (12-219)||(19926760-19926967)
chr4 (12-219)||(26970463-26970670)
chr4 (12-219)||(26963640-26963847)
chr4 (12-219)||(55612683-55612890)
chr4 (12-219)||(868597-868804)
chr4 (12-219)||(5707320-5707527)
chr4 (12-217)||(18262214-18262419)
chr4 (12-219)||(5713948-5714155)
chr4 (12-219)||(10621333-10621540)
chr4 (12-219)||(10628412-10628619)
chr4 (12-217)||(18269070-18269280)
chr4 (12-217)||(28393134-28393339)
chr4 (12-217)||(4426604-4426808)
chr4 (12-207)||(8845215-8845410)
chr4 (12-207)||(8858179-8858374)
chr4 (331-505)||(22339490-22339664)
chr4 (104-219)||(12357136-12357251)
chr4 (12-211)||(20311299-20311499)
chr4 (13-217)||(5616215-5616421)
chr4 (12-213)||(10677555-10677753)
chr4 (12-213)||(10891195-10891393)
chr4 (12-213)||(5668125-5668327)
chr4 (12-213)||(35223576-35223767)
chr4 (255-312)||(5713855-5713912)
chr4 (255-312)||(26963547-26963604)
chr4 (255-312)||(26970370-26970427)
chr4 (255-311)||(19927003-19927059)
chr4 (255-312)||(10621576-10621633)
chr4 (255-311)||(5707228-5707284)
chr4 (255-311)||(12357044-12357100)
chr4 (255-309)||(868507-868561)
chr4 (255-311)||(10628655-10628711)
chr4 (255-311)||(17142372-17142428)
chr4 (255-311)||(55612594-55612650)
chr4 (257-311)||(28393380-28393434)
chr4 (377-455)||(50882036-50882114)
chr4 (255-312)||(18268975-18269032)
chr4 (255-311)||(4426847-4426903)
chr4 (377-455)||(16635416-16635494)
chr4 (103-170)||(39074278-39074346)
chr4 (255-304)||(55992680-55992729)
chr4 (12-193)||(21454137-21454319)
chr4 (255-296)||(5668371-5668412)
chr4 (255-303)||(8845118-8845166)
chr4 (255-303)||(8858082-8858130)
chr4 (255-295)||(18262136-18262176)
chr4 (110-169)||(11161913-11161972)
chr4 (255-309)||(20311207-20311261)
chr4 (255-303)||(24699958-24700006)
[»] chr1 (28 HSPs)
chr1 (12-219)||(18252030-18252237)
chr1 (12-219)||(18532514-18532721)
chr1 (12-219)||(27131409-27131616)
chr1 (12-217)||(21171233-21171438)
chr1 (12-217)||(27310577-27310782)
chr1 (12-217)||(16359035-16359240)
chr1 (12-213)||(36816633-36816834)
chr1 (12-219)||(3855919-3856126)
chr1 (12-219)||(22657221-22657429)
chr1 (12-213)||(27277557-27277756)
chr1 (12-185)||(12006539-12006712)
chr1 (12-185)||(12014284-12014457)
chr1 (255-311)||(18251936-18251992)
chr1 (255-311)||(18532757-18532813)
chr1 (255-311)||(27310821-27310877)
chr1 (12-207)||(9917918-9918106)
chr1 (255-311)||(16359280-16359336)
chr1 (255-312)||(21171479-21171536)
chr1 (391-455)||(7589224-7589288)
chr1 (258-312)||(36816881-36816935)
chr1 (255-312)||(3856164-3856221)
chr1 (259-312)||(22657469-22657522)
chr1 (144-213)||(30720625-30720694)
chr1 (255-311)||(27131652-27131704)
chr1 (353-455)||(24067860-24067962)
chr1 (112-189)||(3403248-3403325)
chr1 (112-189)||(3443494-3443571)
chr1 (255-311)||(27277800-27277856)
[»] scaffold0220 (2 HSPs)
scaffold0220 (12-219)||(18288-18495)
scaffold0220 (255-311)||(18196-18252)
[»] chr7 (28 HSPs)
chr7 (12-219)||(29327784-29327991)
chr7 (12-219)||(11536062-11536269)
chr7 (12-219)||(11542980-11543187)
chr7 (12-217)||(15152445-15152650)
chr7 (12-217)||(15148144-15148349)
chr7 (12-217)||(18561009-18561214)
chr7 (12-217)||(12750828-12751033)
chr7 (16-213)||(12738542-12738739)
chr7 (12-217)||(18257842-18258047)
chr7 (31-213)||(13392157-13392338)
chr7 (12-197)||(2364917-2365101)
chr7 (255-312)||(11543223-11543280)
chr7 (255-311)||(2653275-2653331)
chr7 (255-311)||(12738443-12738499)
chr7 (126-213)||(39111819-39111905)
chr7 (255-312)||(11536305-11536362)
chr7 (255-312)||(12750732-12750789)
chr7 (255-312)||(15152349-15152406)
chr7 (256-312)||(29327689-29327745)
chr7 (27-186)||(7396221-7396381)
chr7 (255-311)||(15148049-15148105)
chr7 (256-312)||(13392029-13392085)
chr7 (102-145)||(3132748-3132791)
chr7 (104-169)||(10234179-10234244)
chr7 (255-311)||(18258087-18258143)
chr7 (187-219)||(2653207-2653239)
chr7 (255-311)||(18560913-18560969)
chr7 (391-455)||(7157465-7157529)
[»] chr6 (29 HSPs)
chr6 (12-219)||(27381252-27381459)
chr6 (12-219)||(27471635-27471842)
chr6 (12-217)||(17684469-17684674)
chr6 (12-219)||(29308890-29309097)
chr6 (12-219)||(29315850-29316057)
chr6 (12-217)||(16566320-16566525)
chr6 (12-219)||(17691440-17691647)
chr6 (12-217)||(188977-189182)
chr6 (12-217)||(25537159-25537364)
chr6 (12-217)||(11651725-11651930)
chr6 (12-217)||(13359269-13359474)
chr6 (12-180)||(20553587-20553755)
chr6 (255-309)||(17691683-17691737)
chr6 (255-312)||(27381495-27381552)
chr6 (255-312)||(27471878-27471935)
chr6 (255-312)||(29308797-29308854)
chr6 (255-312)||(29315757-29315814)
chr6 (255-312)||(17684712-17684769)
chr6 (257-311)||(11651630-11651684)
chr6 (12-181)||(17850495-17850663)
chr6 (255-312)||(25537405-25537462)
chr6 (12-196)||(27925772-27925961)
chr6 (27-200)||(8509941-8510115)
chr6 (157-212)||(31258065-31258120)
chr6 (255-312)||(13359512-13359569)
chr6 (255-303)||(16566563-16566611)
chr6 (255-311)||(189221-189280)
chr6 (255-297)||(16394484-16394526)
chr6 (138-203)||(22259925-22259990)
[»] scaffold0390 (4 HSPs)
scaffold0390 (12-219)||(6934-7141)
scaffold0390 (12-219)||(13950-14157)
scaffold0390 (255-312)||(7177-7234)
scaffold0390 (255-311)||(14193-14249)
[»] chr8 (19 HSPs)
chr8 (12-219)||(21940665-21940872)
chr8 (18-217)||(28554885-28555084)
chr8 (12-217)||(22171491-22171694)
chr8 (12-213)||(6094129-6094330)
chr8 (12-213)||(24642655-24642856)
chr8 (86-213)||(24636860-24636987)
chr8 (255-311)||(21940573-21940629)
chr8 (255-311)||(22070108-22070164)
chr8 (255-312)||(22171395-22171452)
chr8 (259-312)||(24642555-24642608)
chr8 (255-311)||(6094031-6094087)
chr8 (255-312)||(28554790-28554847)
chr8 (15-207)||(38232380-38232570)
chr8 (28-189)||(32872857-32873019)
chr8 (377-455)||(40755860-40755938)
chr8 (140-198)||(2375027-2375085)
chr8 (118-181)||(10920234-10920297)
chr8 (258-312)||(2374946-2375000)
chr8 (274-311)||(24636605-24636642)
[»] chr2 (13 HSPs)
chr2 (12-219)||(21330248-21330455)
chr2 (12-219)||(18796506-18796713)
chr2 (12-217)||(18619807-18620011)
chr2 (74-213)||(19692598-19692737)
chr2 (27-154)||(20977957-20978084)
chr2 (255-311)||(21330493-21330549)
chr2 (12-185)||(36270199-36270373)
chr2 (12-185)||(18822115-18822290)
chr2 (377-455)||(23689061-23689139)
chr2 (255-312)||(19692773-19692830)
chr2 (12-99)||(12098618-12098705)
chr2 (255-312)||(18796411-18796470)
chr2 (28-183)||(36802664-36802820)
[»] scaffold0433 (2 HSPs)
scaffold0433 (12-219)||(7107-7314)
scaffold0433 (255-312)||(7014-7071)
[»] chr5 (21 HSPs)
chr5 (12-219)||(24695466-24695673)
chr5 (12-219)||(18569863-18570070)
chr5 (12-217)||(19714498-19714703)
chr5 (12-213)||(19707218-19707419)
chr5 (31-214)||(27347497-27347679)
chr5 (12-213)||(22547016-22547217)
chr5 (110-219)||(39537962-39538071)
chr5 (34-215)||(17285754-17285935)
chr5 (255-312)||(24695709-24695766)
chr5 (110-213)||(31886537-31886640)
chr5 (255-311)||(19714742-19714798)
chr5 (12-153)||(18807034-18807175)
chr5 (34-215)||(17298907-17299088)
chr5 (255-312)||(19707462-19707519)
chr5 (255-311)||(27347722-27347778)
chr5 (14-106)||(39538701-39538793)
chr5 (103-193)||(33477389-33477479)
chr5 (255-312)||(18570108-18570165)
chr5 (256-311)||(39537870-39537925)
chr5 (377-455)||(19183638-19183716)
chr5 (101-169)||(11479420-11479489)
[»] scaffold0657 (2 HSPs)
scaffold0657 (12-219)||(993-1200)
scaffold0657 (255-311)||(901-957)
[»] scaffold0186 (2 HSPs)
scaffold0186 (12-219)||(25990-26197)
scaffold0186 (256-312)||(26231-26287)
[»] scaffold0063 (2 HSPs)
scaffold0063 (12-217)||(5531-5736)
scaffold0063 (255-312)||(5435-5492)
[»] scaffold0008 (2 HSPs)
scaffold0008 (36-217)||(230365-230545)
scaffold0008 (255-311)||(230584-230640)
[»] scaffold0176 (2 HSPs)
scaffold0176 (155-219)||(8446-8510)
scaffold0176 (255-312)||(8546-8603)
[»] scaffold0203 (1 HSPs)
scaffold0203 (255-312)||(23769-23826)
[»] scaffold0326 (2 HSPs)
scaffold0326 (255-312)||(16522-16579)
scaffold0326 (186-219)||(16615-16648)
[»] scaffold0705 (1 HSPs)
scaffold0705 (255-312)||(41-98)
[»] scaffold0637 (1 HSPs)
scaffold0637 (255-311)||(8944-9000)
[»] scaffold0565 (2 HSPs)
scaffold0565 (255-309)||(10202-10256)
scaffold0565 (169-200)||(10127-10158)
[»] scaffold0767 (1 HSPs)
scaffold0767 (275-311)||(1-37)
[»] scaffold0267 (1 HSPs)
scaffold0267 (379-455)||(8615-8691)
[»] scaffold0170 (1 HSPs)
scaffold0170 (259-312)||(5877-5930)
[»] scaffold0650 (1 HSPs)
scaffold0650 (377-452)||(6516-6591)
[»] scaffold0032 (1 HSPs)
scaffold0032 (118-190)||(92194-92267)
[»] scaffold0453 (1 HSPs)
scaffold0453 (391-455)||(9396-9460)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 54)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 6110271 - 6110064
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6110271 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaagcttgactacggatactttgagaatagtttccttatgttt 6110172  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6110171 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 6110072  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  6110071 tgccttgt 6110064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 10572592 - 10572799
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10572592 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaagcttgactacggatactttgagaatagtttccttatgttt 10572691  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10572692 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 10572791  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  10572792 tgccttgt 10572799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 15600884 - 15601091
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15600884 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaagcttgactacggatactttgagaatagtttccttatgttt 15600983  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15600984 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 15601083  T
Q  212 tgccttgt 219  Q
    || |||||    
T  15601084 tgtcttgt 15601091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 15607429 - 15607636
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15607429 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaagcttgactacggatactttgagaatagtttccttatgttt 15607528  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15607529 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 15607628  T
Q  212 tgccttgt 219  Q
    || |||||    
T  15607629 tgtcttgt 15607636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 13211509 - 13211305
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13211509 atcatcagtctacctacataatagtctctatgctttaatgatatctcacttctcaacaaagcttgactacggatactttgagaatagtttccttatgttt 13211410  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13211409 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 13211310  T
Q  212 tgcct 216  Q
    |||||    
T  13211309 tgcct 13211305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 13248814 - 13248607
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  13248814 atcatcagtctacctacataatagtctctatgctttaatgttatcccacttctcaacaaagcttgactacgaatactttgagaatagtttccttatgttt 13248715  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13248714 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 13248615  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  13248614 tgccttgt 13248607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 16482483 - 16482688
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||    
T  16482483 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttgagagtagtttccttatgttt 16482582  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16482583 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 16482682  T
Q  212 tgcctt 217  Q
    ||||||    
T  16482683 tgcctt 16482688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 17781118 - 17781319
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  17781118 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttgagaatagtttccttatgttt 17781217  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17781218 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 17781317  T
Q  212 tg 213  Q
    ||    
T  17781318 tg 17781319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 10579355 - 10579556
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10579355 atcatcagtctacctacataatagtctctatgctttaatgatatctcacttctcaacaaagcttgactacggatactttgagaatagtttccttatgttt 10579454  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10579455 aatggggtctcacaattaagttatacttaatgttccatttaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 10579554  T
Q  212 tg 213  Q
    ||    
T  10579555 tg 10579556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 18522870 - 18522665
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||    
T  18522870 atcatcagtctacctacataatagtctctatgcttaaatgatatcccacttctcaataaagcttgactacggatactttaagaatagtttccttatgttt 18522771  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18522770 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 18522671  T
Q  212 tgcctt 217  Q
    ||||||    
T  18522670 tgcctt 18522665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 15357586 - 15357793
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  15357586 atcatcagtctacctacataatagtctctatgttttaatgatatcccacttctcaataaagcttgactacggatactttgagaataggttccttatgttt 15357685  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15357686 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactaatctagggactttattattttgaaacaaaacaaaatcaataaagaaa 15357785  T
Q  212 tgccttgt 219  Q
    || |||||    
T  15357786 tgtcttgt 15357793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 8490702 - 8490488
Alignment:
Q  12 atcatcagtctacctacataat-------agtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttcct 104  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  8490702 atcatcagtctacctacataatcgtctgtagtctctatgctttaatgatatcccacttctcaacaaagcttgactacagatactttgagaatagtttcct 8490603  T
Q  105 tatgtttaatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaat 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8490602 tatgtttaatggggtctcacaattaagttatacttaatgttccattaaacagactaactattctagggactttattattttgaaacaaaacaaaatcaat 8490503  T
Q  205 aaagaaatgccttgt 219  Q
    |||||||||||||||    
T  8490502 aaagaaatgccttgt 8490488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 18520182 - 18519980
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||   || ||||||||||||||||||||    
T  18520182 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggat---ttaagaatagtttccttatgttt 18520086  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18520085 aacggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 18519986  T
Q  212 tgcctt 217  Q
    ||||||    
T  18519985 tgcctt 18519980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 19089745 - 19089946
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||    
T  19089745 atcatcagtctacctacataatagtctctatgatttaatgatatcccacttctcaataaagcttgactacggatactttaagaatagtttcattatgttt 19089844  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19089845 aaaggggtctcacaattaagttatacttaatgttccattaaacggactaactaatctagggactttattattttgaaacaaaacaaaatcaataaagaaa 19089944  T
Q  212 tg 213  Q
    ||    
T  19089945 tg 19089946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 17200184 - 17200389
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||| ||| ||| |||||||||||||| ||||||||||| ||||||||    
T  17200184 atcatcagtctacccacataatagtctctatgctttaatgatatcacacatctcaataaagcttaactacggatactttaagaatagtttcattatgttt 17200283  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17200284 aaaggggtatcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 17200383  T
Q  212 tgcctt 217  Q
    ||||||    
T  17200384 tgcctt 17200389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 15342219 - 15342407
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  15342219 atcatcagtctacctacataatagtctctatgttttaatgatatcccacttctcaataaagcttgactacggatactttgagaataggttccttatgttt 15342318  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  15342319 aatggggtctcacaattaagttatacttaatgttccattaaacgaacaaactattctagggactttattattttgaaacaaaacaaaat 15342407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 13517018 - 13516813
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| ||| ||||||||| |||||||| ||||| ||||||||||||||    
T  13517018 atcatcagtctacccacataatagtctctgtgctttaatgatatcctacttctcaataaagcttgactacagatactttaagaatcgtttccttatgttt 13516919  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13516918 aacggggtctcacaattaagttatacttaatgttccatgaaacagactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 13516819  T
Q  212 tgcctt 217  Q
    ||||||    
T  13516818 tgcctt 13516813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 58 - 219
Target Start/End: Original strand, 18640792 - 18640953
Alignment:
Q  58 cacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatggggtctcacaattaagttatacttaatgttccattaaacgga 157  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18640792 cacttctcaataaagcttgactacggatactttgagaatagtttccttatgtttaatggggtctcacaattaagttatacttaatgttccattaaatgga 18640891  T
Q  158 ctaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatgccttgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18640892 ctaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatgccttgt 18640953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 32056900 - 32057101
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||| ||||| ||||||||||| ||||||||    
T  32056900 atcattagtctacccacataatagtctctatgctttaatgatatcccacttctcaataaagtttgactacggacactttaagaatagtttctttatgttt 32056999  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || ||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32057000 aacggggtcttacaataaagttatacttgatgttccattaaacagactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 32057099  T
Q  212 tg 213  Q
    ||    
T  32057100 tg 32057101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 1647521 - 1647726
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||| | |||||||||||||||||||||||| |||||||  ||||||| ||| ||||| |||||||||||| | ||||||||||||||||||    
T  1647521 atcatcagtctatccacataatagtctctatgctttaattatatcccttttctcaataaagcttgattacggatactttaaaaatagtttccttatgttt 1647620  T
Q  112 aatggggtctcacaattaag----ttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaa 207  Q
    || |||||||||||||||||    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1647621 aacggggtctcacaattaagttaattatacttaatgttccattaaacagactaactattctagggactttattattttgaaacaaaacaaaatcaataaa 1647720  T
Q  208 gaaatg 213  Q
    ||||||    
T  1647721 gaaatg 1647726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 16200313 - 16200128
Alignment:
Q  31 aatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatggggtctcacaattaa 130  Q
    ||||||||| ||||||||||||||||||||||| ||| ||| |||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||    
T  16200313 aatagtctccatgctttaatgatatcccacttcacaataaatcttgactacgaatactttaagaataatgtccttatgtttaatggggtctcacaattaa 16200214  T
Q  131 gttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatgcctt 217  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||| |||  ||||||||||||    
T  16200213 gttatacataatgttccattaaacgaactaactattctaaggactttattattttgaaacaaaataaaa-caacgaagaaatgcctt 16200128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 29925163 - 29924971
Alignment:
Q  27 acataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatggggtctcacaa 126  Q
    ||||||||| ||| |||||||||||||||| |||||| ||| ||| |||||||||  ||| ||| |||||| | ||||||| ||||||||||||||||||    
T  29925163 acataatagcctccatgctttaatgatatctcacttcacaataaagcttgactacatatattttaagaataatgtccttatatttaatggggtctcacaa 29925064  T
Q  127 ttaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatgccttgt 219  Q
    |||| |||||||||||  |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  29925063 ttaaattatacttaataatccattaaacggactaactattttaggggctttattattttgaaacaaaacaaaatcaataaagaaatgtcttgt 29924971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 29974316 - 29974124
Alignment:
Q  27 acataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatggggtctcacaa 126  Q
    ||||||||| ||| |||||||||||||||| |||||| ||| ||| |||||||||  ||| ||| |||||| | ||||||| ||||||||||||||||||    
T  29974316 acataatagcctccatgctttaatgatatctcacttcacaataaagcttgactacatatattttaagaataatgtccttatatttaatggggtctcacaa 29974217  T
Q  127 ttaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatgccttgt 219  Q
    |||| |||||||||||  |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  29974216 ttaaattatacttaataatccattaaacggactaactattttaggggctttattattttgaaacaaaacaaaatcaataaagaaatgtcttgt 29974124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 16200619 - 16200434
Alignment:
Q  31 aatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatggggtctcacaattaa 130  Q
    ||||||||  |||||||||||| |||||||||| ||| ||| |||||||||| ||||||| |||||| | |||||||||||| ||| |||||||||||||    
T  16200619 aatagtcttcatgctttaatgacatcccacttcacaataaatcttgactacgaatactttaagaataatgtccttatgtttattggagtctcacaattaa 16200520  T
Q  131 gttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatgcctt 217  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||  ||||||||||||    
T  16200519 gttatacataatgttccattaaacggactaactattctaaggactttattattttgaaacaaaataaaa-caacgaagaaatgcctt 16200434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 24253388 - 24253589
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||| |||||||| ||||||||||||||||||||||||| || | |||||  ||| |||  ||||| ||  ||||||| |||||||| |||||||||||    
T  24253388 atcattagtctaccgacataatagtctctatgctttaatgttacctcactttacaataaattttgaccacatatactttaagaatagtgtccttatgttt 24253487  T
Q  112 aatgggg-tctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaa 210  Q
     |||||| |||||| ||||||| |||||||||||||||| ||||| || | |||||||| ||||||||||||||||||  ||||||||||||||||||||    
T  24253488 gatggggatctcacgattaagtcatacttaatgttccatcaaacgaacgagctattctaaggactttattattttgaagtaaaacaaaatcaataaagaa 24253587  T
Q  211 at 212  Q
    ||    
T  24253588 at 24253589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 17136566 - 17136465
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||    
T  17136566 atcatcagtctacccacataatagtctctatgttttaatgatatcccacttctcaataaagcttgactacggatactttaagaatagtttccttatgttt 17136467  T
Q  112 aa 113  Q
    ||    
T  17136466 aa 17136465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 18534820 - 18534758
Alignment:
Q  155 ggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatgcctt 217  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18534820 ggactaactattctatggactttattattttgaaacaaaacaaaatcaataaagaaatgcctt 18534758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 6110028 - 6109971
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6110028 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 6109971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 13248571 - 13248514
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13248571 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 13248514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 8490452 - 8490396
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8490452 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 8490396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 13211267 - 13211209
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaag 313  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13211267 catgatacaaaaccaaacccaatcaatatagattggctattagggcttattccaacaag 13211209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 18640989 - 18641045
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18640989 catgatacaaagccaaacacaatcaatatagattggctattagggcttattccaaca 18641045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 17136193 - 17136137
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  17136193 catgatacaaagccaaactcaatcaatatagattggctattagggcttactccaaca 17136137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 10579603 - 10579653
Alignment:
Q  261 acaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10579603 acaaagtcaaacccaatcaatatagattggctattagggcttattccaaca 10579653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 15607672 - 15607730
Alignment:
Q  255 catgatacaaagccaaacccaatcaa-tatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  15607672 catgatacaaagccaaacccaataaaatatagattggctattagggcttattccaacaa 15607730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 15351237 - 15351294
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  15351237 catgatacaaagccaaaatcaatcattatagattggctattagggcttattccaacaa 15351294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 15357829 - 15357886
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  15357829 catgatacaaagccaaaatcaatcattatagattggctattagggcttattccaacaa 15357886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 17200427 - 17200484
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  17200427 catgctacaaagccaaacccaatcaacatagattggctattagggcttactccaacaa 17200484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 18510969 - 18510924
Alignment:
Q  172 gactttattattttgaaacaaaacaaaatcaataaagaaatgcctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  18510969 gactttattattttgaaacaaaacaaaatcaataaagaaatgcctt 18510924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 16482727 - 16482782
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  16482727 catgatacaaagccaaacccaatcaatatagattgg-tattagggcttattctaaca 16482782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 18519941 - 18519885
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||    
T  18519941 catgatacaaaaccaaacccaatcaatatagattggctattaggacttactccaaca 18519885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 10572840 - 10572891
Alignment:
Q  261 acaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  10572840 acaaagtcaaacccaatcaatataggttggctattagggcttattccaacaa 10572891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 13516775 - 13516717
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaag 313  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||    
T  13516775 catgatacacagccaaactcaatcaacatagattggctattagggcttactccaacaag 13516717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 15601127 - 15601185
Alignment:
Q  255 catgatacaaagccaaacccaatcaa-tatagattggctattagggcttattccaacaa 312  Q
    ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||    
T  15601127 catgatacaaatccaaacccaataaaatatagattggctattagggcttattccaacaa 15601185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 17781358 - 17781415
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||| ||| |||||| |||||||||||||||||||||||||||||| ||||||||    
T  17781358 catgatataaaaccaaactcaatcaatatagattggctattagggcttactccaacaa 17781415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 19089985 - 19090042
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||| ||| |||||| |||||||||||||||||||||||||||||| ||||||||    
T  19089985 catgatataaaaccaaactcaatcaatatagattggctattagggcttactccaacaa 19090042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 1647768 - 1647824
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||| |||||||    
T  1647768 catgatacaaagccaaacccaatcaatatagaccagctattagggcttactccaaca 1647824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 32057144 - 32057200
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||| ||||||||||||| |||||||||||||||| ||||| |||||||    
T  32057144 catgatacaaagtcaaacccaatcaacatagattggctattagagcttactccaaca 32057200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 455
Target Start/End: Original strand, 23046330 - 23046433
Alignment:
Q  352 gtgataacacttaagatgtattaccattttagcttgacgtacacatgttttgatctcgattttatagatccttgcaaagttatgctgattttgtgtgtct 451  Q
    |||||||||| ||| ||| | ||  ||||||||| ||| ||||||| |||| |||||||||||||||||  |||||| |||||| || | ||||||||||    
T  23046330 gtgataacacgtaaaatgcaatattattttagctcgacttacacatttttttatctcgattttatagatttttgcaatgttatgttggtattgtgtgtct 23046429  T
Q  452 attt 455  Q
    ||||    
T  23046430 attt 23046433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 18510885 - 18510828
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||  ||||| ||||||||||||||||| |||||||||||| ||||||||    
T  18510885 catgatacaaaatcaaactcaatcaatatagattggatattagggcttactccaacaa 18510828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 18522626 - 18522569
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||  ||||| ||||||||||||||||| |||||||||||| ||||||||    
T  18522626 catgatacaaaatcaaactcaatcaatatagattggatattagggcttactccaacaa 18522569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 18534719 - 18534662
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||| |||||| |||||||||||||||| ||||||||||||| | ||||||    
T  18534719 catgatacaaaaccaaactcaatcaatatagattgactattagggcttactacaacaa 18534662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 29924935 - 29924879
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||| | ||||| |||||||||||||| | ||||||||||||| |||||||    
T  29924935 catgatacaatgtcaaactcaatcaatatagatcgactattagggcttactccaaca 29924879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 29974088 - 29974032
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||| | ||||| |||||||||||||| | ||||||||||||| |||||||    
T  29974088 catgatacaatgtcaaactcaatcaatatagatcgactattagggcttactccaaca 29974032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 2321 - 2528
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  2321 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttgagaatagtttccttatgttt 2420  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2421 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 2520  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  2521 tgccttgt 2528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 11212 - 11419
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  11212 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttgagaatagtttccttatgttt 11311  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11312 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 11411  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  11412 tgccttgt 11419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 2564 - 2621
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2564 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 2621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 11455 - 11512
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11455 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 11512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 19926760 - 19926967
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  19926760 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttgagaatagtttccttatgttt 19926859  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19926860 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 19926959  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  19926960 tgccttgt 19926967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 26970670 - 26970463
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  26970670 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaatcttgactacggatactttgagaatagtttccttatgttt 26970571  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26970570 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 26970471  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  26970470 tgccttgt 26970463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 26963847 - 26963640
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  26963847 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaatcttgactacggatactttgagaatagtttccttatgttt 26963748  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26963747 aatggggtctcacaattaagttatatttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 26963648  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  26963647 tgccttgt 26963640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 55612890 - 55612683
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||    
T  55612890 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttgagagtagtttccttatgttt 55612791  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55612790 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 55612691  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  55612690 tgccttgt 55612683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 868804 - 868597
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  868804 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaagcttgactacggatactttgagaatagtttccttatgttt 868705  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  868704 aacggggtctcacaattaagttatacttaatgttccattaaatggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 868605  T
Q  212 tgccttgt 219  Q
    || |||||    
T  868604 tgtcttgt 868597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 5707527 - 5707320
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  5707527 atcatcagtctacctacataatagtctctatgctttaatgatatctcacttctcaataaagcttgactacggatactttgagaatagtttccttatgttt 5707428  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5707427 aatggggtctcacaattaagttatacttaatgttccattaaatggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 5707328  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  5707327 tgccttgt 5707320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 18262419 - 18262214
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  18262419 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcatcaaagcttgactacggatactttgagaatagtttccttatgttt 18262320  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18262319 aacggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacgaaacaaaatcaataaagaaa 18262220  T
Q  212 tgcctt 217  Q
    ||||||    
T  18262219 tgcctt 18262214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 5714155 - 5713948
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  5714155 atcatcagtctacctacataatagtctctatgctttaatgatatctcacttctcaataaagcttgactacggatactttgagaatagtttccttatgttt 5714056  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5714055 aatggggtctcacaattaagttatacttaatgttccattaaatgggctaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 5713956  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  5713955 tgccttgt 5713948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 10621333 - 10621540
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  10621333 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacagatactttgagaatagtttccttatgttt 10621432  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10621433 aatgggctctcacaattaagttatacttaatgttccattaaacggactaactattccagggactttattattttgaaacaaaacaaaatcaataaagaaa 10621532  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  10621533 tgccttgt 10621540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 10628412 - 10628619
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  10628412 atcatcagtctacctacataatagtctctatgctttaataatatcccacttctcaataaagcttgactacagatactttgagaatagtttccttatgttt 10628511  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10628512 aatgggctctcacaattaagttatacttaatgttccattaaacggactaactattccagggactttattattttgaaacaaaacaaaatcaataaagaaa 10628611  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  10628612 tgccttgt 10628619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 18269280 - 18269070
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  18269280 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcatcaaagcttgactacggatactttgagaatagtttccttatgttt 18269181  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaac-----aaaatcaataa 206  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||    
T  18269180 aacggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaacaaaatcaataa 18269081  T
Q  207 agaaatgcctt 217  Q
    |||||||||||    
T  18269080 agaaatgcctt 18269070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 28393134 - 28393339
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  28393134 atcatcagtctacccacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacagatactttaagaatagtttccttatgttt 28393233  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  28393234 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattttagggactttattattttgaaacaaatcaaaatcaataaagaaa 28393333  T
Q  212 tgcctt 217  Q
    ||||||    
T  28393334 tgcctt 28393339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 4426604 - 4426808
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| ||||||||||    
T  4426604 atcatcagtctacccacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttaagaatagtt-ccttatgttt 4426702  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4426703 aacggggtctcacaattaagttatacttaatgttccattaaacggactaactattctaaggactttattattttgaaacaaaacaaaatcaataaagaaa 4426802  T
Q  212 tgcctt 217  Q
    ||||||    
T  4426803 tgcctt 4426808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 8845410 - 8845215
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| ||||||||||||||||||||    
T  8845410 atcatcagcctacccacataatagtctctatgctttaatgatatccgacttctcaataaagcttgactacggatactttaagaatagtttccttatgttt 8845311  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaa 207  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8845310 aacgggatctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaa 8845215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 8858374 - 8858179
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| ||||||||||||||||||||    
T  8858374 atcatcagcctacccacataatagtctctatgctttaatgatatccgacttctcaataaagcttgactacggatactttaagaatagtttccttatgttt 8858275  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaa 207  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8858274 aacgggatctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaa 8858179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 331 - 505
Target Start/End: Complemental strand, 22339664 - 22339490
Alignment:
Q  331 gtatgaacttgcatcaaaatggtgataacacttaagatgtattaccattttagcttgacgtacacatgttttgatctcgattttatagatccttgcaaag 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||    
T  22339664 gtatgaacttgcatcaaaatggtgataacacttaagatgtattaccattttagctcgatttacacatgttttgatctcgattttatagatccttgcaaag 22339565  T
Q  431 ttatgctgattttgtgtgtctatttgatgaaaaagggcgnnnnnnnggaagaaaatacaaatcccaacttgtctt 505  Q
    ||||||||||||||| ||||||||||||||||||| |||       |||||||||||||||||||| ||||||||    
T  22339564 ttatgctgattttgtatgtctatttgatgaaaaagtgcgaaaaaaaggaagaaaatacaaatcccagcttgtctt 22339490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 12357251 - 12357136
Alignment:
Q  104 ttatgtttaatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12357251 ttatgtttaatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaa 12357152  T
Q  204 taaagaaatgccttgt 219  Q
    ||||||||||||||||    
T  12357151 taaagaaatgccttgt 12357136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 20311499 - 20311299
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||| |||||| ||| |||||||||||||||||||||||||| |||||| ||| ||| |||||| ||  ||||||| | || ||| |||||||||||    
T  20311499 atcatcaatctacccacaaaatagtctctatgctttaatgatatctcacttcacaataaagcttgacaacaaatactttaaaaacagtgtccttatgttt 20311400  T
Q  112 aatggggtctcacaattaagttata-cttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaa 210  Q
    ||||||||||||||||||||||||| ||||||| |||||| |||  | |||||||| || | ||||||||||||| ||||||||||||||||||||||||    
T  20311399 aatggggtctcacaattaagttataccttaatgctccattgaacatattaactattataagtactttattattttaaaacaaaacaaaatcaataaagaa 20311300  T
Q  211 a 211  Q
    |    
T  20311299 a 20311299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 5616421 - 5616215
Alignment:
Q  13 tcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaac--ttgactacggatactttgagaatagtttccttatgtt 110  Q
    |||||| ||||| |||||||||||||| |||||||| | |||||||| |||  || |||||  ||||| ||||||||||| |||||| | ||||   |||    
T  5616421 tcatcaatctacatacataatagtctcaatgctttattaatatcccaattcataataaaacctttgacaacggatactttaagaataatgtcctctagtt 5616322  T
Q  111 taatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaa 210  Q
    ||| ||| |||||  ||| ||| | |||||||||||||  |||  |||||| |||| |||| |||||||||||||||||||||||||||| |||||||||    
T  5616321 taacgggatctcatgatttagtcagacttaatgttccaagaaatagactaattattttaggaactttattattttgaaacaaaacaaaatgaataaagaa 5616222  T
Q  211 atgcctt 217  Q
    |||||||    
T  5616221 atgcctt 5616215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 10677555 - 10677753
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| |||||||||||| ||| |||||||| |||| || ||| | |  || |||||||||||||||||| |||||| | || ||  ||||    
T  10677555 atcatcagtctacccacataatagtctatatactttaatgttatctcatttcacta--aagcttgactacggatactttaagaataatatcatttcgttt 10677652  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||| |||| | ||||||| |||||||||| ||||||| || |||||| |||| ||||| ||||||| | ||||||||||| |||||||||||| |||    
T  10677653 aatggg-tctcgcgattaagtcatacttaatgctccattatacagactaattattttaggggctttattttattgaaacaaaagaaaatcaataaaaaaa 10677751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 10891195 - 10891393
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| |||||||||||| ||| |||||||| |||| || ||| | |  || |||||||||||||||||| |||||| | || ||  ||||    
T  10891195 atcatcagtctacccacataatagtctatatactttaatgttatctcatttcacta--aagcttgactacggatactttaagaataatatcatttcgttt 10891292  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||| |||| | ||||||| |||||||||| ||||||| || |||||| |||| ||||| ||||||| | ||||||||||| |||||||||||| |||    
T  10891293 aatggg-tctcgcgattaagtcatacttaatgctccattatacagactaattattttaggggctttattttattgaaacaaaagaaaatcaataaaaaaa 10891391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 5668125 - 5668327
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggata--ctttgagaatagtttccttatgt 109  Q
    |||||| ||||| | ||||||||||||||||| ||||||| |||| |  ||| ||| ||| |||||||||  |||  |||| |||||| | |||||   |    
T  5668125 atcatcggtctatccacataatagtctctatgatttaatgttatctcttttcacaataaagcttgactacaaatatactttaagaataatgtcctttcat 5668224  T
Q  110 ttaatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaaga 209  Q
    |||||||| |||||| ||||| | | |||||||| |||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  5668225 ttaatggg-tctcacgattaaatcacacttaatgctccattaaatagactaattattctagagactttattattttgaaacaaaacaaaatcaacaaaga 5668323  T
Q  210 aatg 213  Q
    ||||    
T  5668324 aatg 5668327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 35223767 - 35223576
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||| ||||||| |||||||||||| |||||||||||| |||||   ||  ||| ||| |||||||||| ||||||| |||||| | |||||  ||||    
T  35223767 atcatccgtctacccacataatagtctatatgctttaatgttatccttttttacaataaagcttgactacgaatactttaagaataatgtcctttcgttt 35223668  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
     | |          ||||||| | |||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  35223667 tacg----------attaagtcacacttaatgctccattaaacagactaattattctagggactttattattttaaaacaaaacaaaatcaacaaagaaa 35223578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 5713912 - 5713855
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5713912 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 5713855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 26963604 - 26963547
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26963604 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 26963547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 26970427 - 26970370
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26970427 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 26970370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 19927003 - 19927059
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19927003 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 19927059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 10621576 - 10621633
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10621576 catgatacaaagccaaaaccaatcaatatagattggctattagggcttattccaacaa 10621633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 5707284 - 5707228
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5707284 catgatacaaagccaaacacaatcaatatagattggctattagggcttattccaaca 5707228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 12357100 - 12357044
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12357100 catgatacaaagccaaatccaatcaatatagattggctattagggcttattccaaca 12357044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 868561 - 868507
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  868561 catgatacaaagccaaacccaatcaatatagattggctattagggtttattccaa 868507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 10628655 - 10628711
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  10628655 catgatacaaagtcaaaaccaatcaatatagattggctattagggcttattccaaca 10628711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 17142372 - 17142428
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  17142372 catgatacaaagtcaaacccaatcaatatagattggctattagggctttttccaaca 17142428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 55612650 - 55612594
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  55612650 catgatacaaagccaaacccaatcaatatagattggttattagggcttattctaaca 55612594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 28393380 - 28393434
Alignment:
Q  257 tgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  28393380 tgatacaaagtcaaacccaatcaatatagattggctattagggcttactccaaca 28393434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 455
Target Start/End: Complemental strand, 50882114 - 50882036
Alignment:
Q  377 attttagcttgacgtacacatgttttgatctcgattttatagatccttgcaaagttatgctgattttgtgtgtctattt 455  Q
    ||||||||| ||| || |||||||||||||||||||||||||||  |||||| ||||||||| | ||||||||||||||    
T  50882114 attttagctcgacttatacatgttttgatctcgattttatagatttttgcaatgttatgctggtattgtgtgtctattt 50882036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 18269032 - 18268975
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||    
T  18269032 catgatacaaagccaaacccattcaacatagattggctatttgggcttattccaacaa 18268975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 4426847 - 4426903
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||    
T  4426847 catgatacagagccaaacccaatcaatatagattggctattaggacttactccaaca 4426903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 455
Target Start/End: Original strand, 16635416 - 16635494
Alignment:
Q  377 attttagcttgacgtacacatgttttgatctcgattttatagatccttgcaaagttatgctgattttgtgtgtctattt 455  Q
    ||||||||| ||| ||||||| ||||||||||||||||||||||  |||||| ||||||||| | ||| ||||||||||    
T  16635416 attttagctcgacttacacattttttgatctcgattttatagatttttgcaatgttatgctggtattgcgtgtctattt 16635494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 39074278 - 39074346
Alignment:
Q  103 cttatgtttaatggggtctcacaattaagttatacttaatgttcca-ttaaacggactaactattctag 170  Q
    |||||||||||||||||||||  ||||||| ||||||||||||| | ||||||||||||| ||||||||    
T  39074278 cttatgtttaatggggtctcatgattaagtcatacttaatgttcaatttaaacggactaattattctag 39074346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 55992729 - 55992680
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttat 304  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||||||    
T  55992729 catgatacaaagtcaaacccaatcaatacaaattggctattagggcttat 55992680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 21454137 - 21454319
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||| |||||  |||||||| ||| ||||| ||| || |||| || ||| ||| |||  |||||||  |||| ||| | |||| | || ||||  ||    
T  21454137 atcatcaatctactcacataataatctttatgcattattgttatctcatttcacaataaagtttgactatagatattttaaaaataatgtcattataatt 21454236  T
Q  112 aatggggtctcacaattaagttatactt-aatgttccattaaacggactaactattctagggactttattattttgaaacaaa 193  Q
    ||||||||||||  ||||||| | | || ||||||||||||| |  ||||||||||||| | ||||||||| |||||||||||    
T  21454237 aatggggtctcaatattaagtcacattttaatgttccattaatcaaactaactattctaagaactttattactttgaaacaaa 21454319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 5668371 - 5668412
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctatta 296  Q
    ||||||||||| |||||| |||||||||||||||||||||||    
T  5668371 catgatacaaaaccaaacacaatcaatatagattggctatta 5668412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 8845166 - 8845118
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggctta 303  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||| ||||    
T  8845166 catgatacaaagtcaaactcaatcaacatagattggctattaggactta 8845118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 8858130 - 8858082
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggctta 303  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||| ||||    
T  8858130 catgatacaaagtcaaactcaatcaacatagattggctattaggactta 8858082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 18262176 - 18262136
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctatt 295  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  18262176 catgatacaaagccaaacccattcaacatagattggctatt 18262136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 11161913 - 11161972
Alignment:
Q  110 ttaatggggtctcacaattaagttatacttaatgttccattaaacggactaactattcta 169  Q
    ||||||| ||||||||||||||| | ||||  ||||||||||||| || |||||||||||    
T  11161913 ttaatggagtctcacaattaagtcacactttgtgttccattaaactgattaactattcta 11161972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 20311261 - 20311207
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaa 309  Q
    ||||||||||||||||| ||||| |||| |||||||||||||  ||||| |||||    
T  20311261 catgatacaaagccaaatccaatgaatacagattggctattacagcttactccaa 20311207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 24700006 - 24699958
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggctta 303  Q
    ||||||||||| |||||  ||||||||||||||||| |||| |||||||    
T  24700006 catgatacaaaaccaaattcaatcaatatagattggttattcgggctta 24699958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 18252237 - 18252030
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  18252237 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttgagaatagtttccttatgttt 18252138  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18252137 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 18252038  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  18252037 tgccttgt 18252030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 18532514 - 18532721
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18532514 atcatcagtctatctacataatagtctctatgctttaatgatatcccacttctcaacaaagcttgactacggatactttgagaatagtttccttatgttt 18532613  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18532614 aatggggtctcacaattaagttatacttaatgttccattaaacgaactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 18532713  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  18532714 tgccttgt 18532721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 27131409 - 27131616
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||  ||||||||||||||||||||||||||||    
T  27131409 atcatcagtctacctacataatagtctttatgctttaatgatatcccacttctcaataaagcttgactacaaatactttgagaatagtttccttatgttt 27131508  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27131509 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 27131608  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  27131609 tgccttgt 27131616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 21171233 - 21171438
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||     
T  21171233 atcatcagtctacccacataatagtctttatgctttaatgatatcccacttctcaataaagcttgactacggatactttaagaatagtttccttatgttc 21171332  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21171333 aacggggtctcacaattaagttatatttaatgttccatgaaacggactaactattctaaggactttattattttgaaacaaaacaaaatcaataaagaaa 21171432  T
Q  212 tgcctt 217  Q
    ||||||    
T  21171433 tgcctt 21171438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 27310577 - 27310782
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| |||||||| |||||||||||||||||||     
T  27310577 atcatcagtctacccacataatagtctctatgctttaatgatattccacttctcaataaagcttgactactgatactttaagaatagtttccttatgttc 27310676  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27310677 aacgtggtctcacaattaagttatacttaatgttccattaaacggactaactattctaaggactttattattttgaaacaaaacaaaatcaataaagaaa 27310776  T
Q  212 tgcctt 217  Q
    ||||||    
T  27310777 tgcctt 27310782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 16359035 - 16359240
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||| |||||||| || |||||| ||||||||||||||||||||    
T  16359035 atcatcagtctacccacataatagtctctatgctttaatgatattccatttctcaataaagcttgactagggttactttaagaatagtttccttatgttt 16359134  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16359135 aacggggtctcacaattaagttattcttaatgttccattaaacagactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 16359234  T
Q  212 tgcctt 217  Q
    ||||||    
T  16359235 tgcctt 16359240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 36816633 - 36816834
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||||||| |||||| | |||||||||||    
T  36816633 atcatcagtctatccacataatagtctctatgctttaatggtatcccacttctcaataaagcttgactatggatactttaagaataatgtccttatgttt 36816732  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || || ||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36816733 aacggagtctcacaattaatttatacttaatgttccattaaacagacgaactattctagggacttcattattttgaaacaaaacaaaatcaataaagaaa 36816832  T
Q  212 tg 213  Q
    ||    
T  36816833 tg 36816834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 3855919 - 3856126
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| || |||||||||| |||||||||| |||||||||||| ||| |||  ||||||||  ||| ||| |||||| | |||||||||||    
T  3855919 atcatcagtctacccacgtaatagtctccatgctttaataatatcccacttcacaataaagtttgactacaaatattttaagaataatgtccttatgttt 3856018  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| || |||||||    
T  3856019 aatggggtctcacaattaagttatacttaatgttccattaaacgggctaactattctagggactttgttattttgaaacaaaacaaaataaacaaagaaa 3856118  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  3856119 tgccttgt 3856126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 22657221 - 22657429
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||| | |||| ||||||||||||||||||||||||| || |||  || ||| ||||||||  || ||||| ||||| || |||||||||||    
T  22657221 atcatcagtctatccacatgatagtctctatgctttaatgatatctcatttcagaataaagcttgactagagacactttaagaattgtgtccttatgttt 22657320  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaac-aaaatcaataaagaa 210  Q
    || |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  22657321 aaaggggtctcacaattaagttatatttaatgttccattaaacagactaactattctaggaactttattattttgaaacaaaacaaaaatcaataaagaa 22657420  T
Q  211 atgccttgt 219  Q
    ||| |||||    
T  22657421 atgtcttgt 22657429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 27277557 - 27277756
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||||||  ||| ||| ||| | |||||||||||||||| |||||| | || ||  | ||    
T  27277557 atcatcggtctacccacataatagtctctatgctttaatgttatcccttttcacaataaagcctgactacggatactttaagaataatgtcatttcggtt 27277656  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||  || |||| | ||||||| | ||| |||| ||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||| ||| |||||||    
T  27277657 aaaagg-tctcgcgattaagtcacact-aatgctccgttaaatggactaattattctagggacgttattattttgaaacaaaacaaaaacaacaaagaaa 27277754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 12006539 - 12006712
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||||||   |||||| | |||||| | ||||||| |||||| |||| ||  ||  |||||||||| ||  ||| | |||| | |||||||||||    
T  12006539 atcatcagtctatgcacataacaatctctaagttttaatgttatccctcttcacactaaggcttgactacgaatgttttaataataatgtccttatgttt 12006638  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattatttt 185  Q
     |||||||||||| ||||||  | ||||||| ||||||||||  ||||||||||||||||||||||||||||||    
T  12006639 catggggtctcacgattaaggcacacttaatattccattaaatagactaactattctagggactttattatttt 12006712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 12014284 - 12014457
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||| |||||| ||||||| |||| || ||||||||  |||||| |||| ||  ||| ||| |||||||||  ||| ||||||   || ||||||||    
T  12014284 atcatcattctacccacataatggtctttacgctttaatcgtatccctcttcacactaaagcttaactacggatgttttaagaataacatcattatgttt 12014383  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattatttt 185  Q
    |||||| ||| || ||||| ||| ||||||| |||||||||||||||||  |||||||| ||||||||||||||    
T  12014384 aatgggatctaacgattaatttacacttaatattccattaaacggactatgtattctagtgactttattatttt 12014457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 18251992 - 18251936
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18251992 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 18251936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 18532757 - 18532813
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18532757 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 18532813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 27310821 - 27310877
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  27310821 catgatacaaagccaaactcaatcaatatagattggctattagggcttactccaaca 27310877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 9917918 - 9918106
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||  ||||| ||||| || ||||||||||| |||| ||||||||||  ||| ||| ||| ||||  |||| ||| |||||| | ||||||| |||    
T  9917918 atcatcaacctaccgacatagtattctctatgcttcaatgctatcccacttaacaataaagcttaactatagatattttaagaataatgtccttatattt 9918017  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaa 207  Q
    |||||  ||||   || |||||||||||||||||| |||||||  |||||       || ||||||||||||||| ||||||||||||||||||||    
T  9918018 aatgga-tctcgtgatcaagttatacttaatgttcgattaaacaaactaa------aagtgactttattattttgtaacaaaacaaaatcaataaa 9918106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 16359280 - 16359336
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||| |||||||    
T  16359280 catgatacaaatcctaacccaatcaatatagattggctattagggcttactccaaca 16359336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 21171479 - 21171536
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||||||||| ||||| |||||||||||||||||| ||||| ||||||||    
T  21171479 catgatacaaagccaaactcaatccatatagattggctattagagcttactccaacaa 21171536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 391 - 455
Target Start/End: Complemental strand, 7589288 - 7589224
Alignment:
Q  391 tacacatgttttgatctcgattttatagatccttgcaaagttatgctgattttgtgtgtctattt 455  Q
    ||||||| ||||||||||||||||||||||  |||||| ||||||||| | ||||||||||||||    
T  7589288 tacacattttttgatctcgattttatagatttttgcaatgttatgctggtattgtgtgtctattt 7589224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 36816881 - 36816935
Alignment:
Q  258 gatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||||||||||||||||||  |||||||||||| ||| ||||    
T  36816881 gatacaaagccaaacccaatcaatatagattgaatattagggcttaatccgacaa 36816935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 3856164 - 3856221
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||| ||||||||||||| || |||||||||||||||| || ||||||||    
T  3856164 catgatacaaagtcaaacccaatcaagatggattggctattagggcctactccaacaa 3856221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 312
Target Start/End: Original strand, 22657469 - 22657522
Alignment:
Q  259 atacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||    
T  22657469 atacaaagccaaactcaatcaatatatattggctattaaggcttactccaacaa 22657522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 30720625 - 30720694
Alignment:
Q  144 ttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatg 213  Q
    |||||||||||| ||||| ||||| ||| ||||||||||||| |||||||| |||| ||||||| |||||    
T  30720625 ttccattaaacgaactaattattccaggaactttattattttaaaacaaaataaaaccaataaaaaaatg 30720694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 27131652 - 27131704
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    ||||||||||||||||||||||     ||||||||||||||||||||||||||||||    
T  27131652 catgatacaaagccaaacccaac----atagattggctattagggcttattccaaca 27131704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 455
Target Start/End: Original strand, 24067860 - 24067962
Alignment:
Q  353 tgataacacttaagatgtattaccattttagcttgacgtacacatgttttgatctcgattttatagatccttgcaaagttatgctgattttgtgtgtcta 452  Q
    ||||||||| ||| ||| |||||  |||||||| ||| ||||||||||||||| | ||||||| ||||  |||||  |||||| || | |||||||||||    
T  24067860 tgataacacgtaaaatgcattacttttttagctcgacttacacatgttttgattttgattttacagatttttgcattgttatgttggtattgtgtgtcta 24067959  T
Q  453 ttt 455  Q
    |||    
T  24067960 ttt 24067962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 3403325 - 3403248
Alignment:
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaa 189  Q
    |||| ||||||||| |||||| | ||||||| ||||||||| | ||||||||||| ||  |||||||||| |||||||    
T  3403325 aatgtggtctcacatttaagtcacacttaatattccattaatcagactaactattttatagactttattactttgaaa 3403248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 3443494 - 3443571
Alignment:
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaa 189  Q
    |||| ||||||||| |||||| | ||||||| ||||||||| | ||||||||||| ||  |||||||||| |||||||    
T  3443494 aatgtggtctcacatttaagtcacacttaatattccattaatcagactaactattttatagactttattactttgaaa 3443571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 27277800 - 27277856
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||| |||||  ||| || |||||||||||||||||||||| |||||||    
T  27277800 catgatacaaagtcaaacataattaacatagattggctattagggcttactccaaca 27277856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 18495 - 18288
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18495 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaagcttgactacggatactttgagaatagtttccttatgttt 18396  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18395 aatggggtctcacaattaagttatacttaatgttcaattaaatggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 18296  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  18295 tgccttgt 18288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 18252 - 18196
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18252 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 18196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 29327991 - 29327784
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  29327991 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttgagaatagtttccttatgttt 29327892  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29327891 aatggggtctcacaattaagttatacttaatgttccattaaactgactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 29327792  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  29327791 tgccttgt 29327784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 11536062 - 11536269
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  11536062 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttgagaataggttccttatgttt 11536161  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11536162 aatggggtctcacaattaagttgtacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 11536261  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  11536262 tgccttgt 11536269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 11542980 - 11543187
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  11542980 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttgagaataggttccttatgttt 11543079  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11543080 aatggggtctgacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 11543179  T
Q  212 tgccttgt 219  Q
    ||| ||||    
T  11543180 tgcattgt 11543187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 15152650 - 15152445
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||| |||||||    
T  15152650 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttaagaatagtttccgtatgttt 15152551  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  15152550 aacggggtctcacaattaagttatacttaatgttccattaaacggactaactattctaggaactttattattttgaaacaaaacaaactcaataaagaaa 15152451  T
Q  212 tgcctt 217  Q
    ||||||    
T  15152450 tgcctt 15152445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 15148349 - 15148144
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  15148349 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacagatactttaagaatagtttccttatgttt 15148250  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  15148249 aacggggtctcacaattaagttatacttaatgttcaatcaaacggactaactattctaggaactttattattttgaaacaaaacaaactcaataaagaaa 15148150  T
Q  212 tgcctt 217  Q
    ||||||    
T  15148149 tgcctt 15148144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 18561214 - 18561009
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||| ||||||||| |||||||| ||||||||||||| ||||||    
T  18561214 atcatcagtctacccacataatagtctctatgctttaatgatatcccacctctcaataaagcttgactacagatactttaagaatagtttcctaatgttt 18561115  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18561114 aacggggtctcacagttaagttatacttaatgttccattaaacagactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 18561015  T
Q  212 tgcctt 217  Q
    ||||||    
T  18561014 tgcctt 18561009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 12751033 - 12750828
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||    
T  12751033 atcatcagtctatccacataatagtctctatgctttaatgatatccaacttctcaataaagcttgactacggatactttaagaatagtttctttatgttt 12750934  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12750933 aacgaggtctcacaattaagttatacttaatgtttcattaaacggactaactattctagggactttattactttgaaacaaaacaaaatcaataaagaaa 12750834  T
Q  212 tgcctt 217  Q
    ||||||    
T  12750833 tgcctt 12750828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 12738739 - 12738542
Alignment:
Q  16 tcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatg 115  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||||||||||||||      
T  12738739 tcagtctacccacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacagatactttaagaatagtttccttatgtttaaca 12738640  T
Q  116 gggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatg 213  Q
     |||||||||||||||||||| |||||||| ||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12738639 aggtctcacaattaagttataattaatgtttcattaaacaaactaactattctagggactttattattttgaaacaaaataaaatcaataaagaaatg 12738542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 18257842 - 18258047
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||| |||| | |||||||||||| ||||| ||| || ||||| ||||  ||| |||||||||||||||||||||| |||||| | ||||| |||||    
T  18257842 atcatcaatctatccacataatagtctttatgcattattgttatcctacttaacaaaaaaacttgactacggatactttaagaataatgtccttgtgttt 18257941  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18257942 aatggggtctcacaattaagtcatacttaatgttccattaaacagactaattattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 18258041  T
Q  212 tgcctt 217  Q
    ||||||    
T  18258042 tgcctt 18258047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 31 - 213
Target Start/End: Complemental strand, 13392338 - 13392157
Alignment:
Q  31 aatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatggggtctcacaattaa 130  Q
    ||||||||||||| ||||||| ||||||  ||| ||| |||  |||||||  |||||||| |||||| | |||||   ||||||||| |||||| |||||    
T  13392338 aatagtctctatgttttaatgttatcccttttcacaataaagtttgactattgatactttaagaataatgtcctttcatttaatggg-tctcacgattaa 13392240  T
Q  131 gttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatg 213  Q
    || | |||||||| |||||||| | |||||| | ||||||| |||||||||||||||||||||||||| |||| |||||||||    
T  13392239 gtcacacttaatgctccattaagcagactaattgttctaggaactttattattttgaaacaaaacaaagtcaacaaagaaatg 13392157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 2365101 - 2364917
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||| ||| |||| |||||||||||| ||||||| |||| || ||| ||| ||   ||||||||| ||| ||| |||||| | || ||  ||||    
T  2365101 atcatcagtcgacccacatgatagtctctatgttttaatgttatctcatttcacaataagg-ttgactacgaatattttaagaataatgtcatttagttt 2365003  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaa 197  Q
    |||||| |||||| ||||||  | |||||||||||||||| |  |||||| |||||||| |||||||||||||||||||| |||||    
T  2365002 aatgggttctcacgattaagccacacttaatgttccattagaaagactaattattctagagactttattattttgaaacataacaa 2364917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 11543223 - 11543280
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11543223 catgatacaaagccaaaaccaatcaatatagattggctattagggcttattccaacaa 11543280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 2653275 - 2653331
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2653275 catgatacaaagccaatcccaatcaatatagattggctattagggcttattccaaca 2653331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 12738499 - 12738443
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12738499 catgatacaaagccaaacccaatcaatatagattggctattagggcttactccaaca 12738443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 39111905 - 39111819
Alignment:
Q  126 attaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatg 213  Q
    |||||||  ||||||||||| |||||||||||||  ||||||||||||||||||| |||||||| |||||||||| ||||||||||||    
T  39111905 attaagtcgtacttaatgtttcattaaacggactcgctattctagggactttatt-ttttgaaataaaacaaaattaataaagaaatg 39111819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 11536305 - 11536362
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  11536305 catgatacaaagccaaaaccaatcaatatagagtggctattagggcttattccaacaa 11536362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 12750789 - 12750732
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  12750789 catgatacaaagccaaacccaatcaatatagattagctattagggcttactccaacaa 12750732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 15152406 - 15152349
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  15152406 catgatacaaaaccaaacccaatcaatatagattggctattagggcttactccaacaa 15152349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 29327745 - 29327689
Alignment:
Q  256 atgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  29327745 atgatacaaaaccaaacccaatcaatatagattggctattagggcttactccaacaa 29327689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 186
Target Start/End: Complemental strand, 7396381 - 7396221
Alignment:
Q  27 acataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatggggtctcacaa 126  Q
    ||||||||||||||||||||||||   |||  | ||| ||  ||  |||||||||  ||  ||| |||||| ||| |||||||||||| ||||||||  |    
T  7396381 acataatagtctctatgctttaatatcatcgtatttcacactaaggcttgactacatatgttttaagaataattttcttatgtttaatagggtctcaaga 7396282  T
Q  127 ttaagttatacttaatgttcca-ttaaacggactaactattctagggactttattattttg 186  Q
    |||||| ||||||||||||||| ||||| | |||||||||||||| ||| || ||||||||    
T  7396281 ttaagtcatacttaatgttccatttaaatgaactaactattctagcgacatttttattttg 7396221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 15148105 - 15148049
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||    
T  15148105 catgatacaaaaccaaacccaattaatatagattggctattagggcttactccaaca 15148049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 13392085 - 13392029
Alignment:
Q  256 atgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||||| ||||||||    
T  13392085 atgatacaaagtcaaacacaatcaatatagattggatattagggcttactccaacaa 13392029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 3132791 - 3132748
Alignment:
Q  102 ccttatgtttaatggggtctcacaattaagttatacttaatgtt 145  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  3132791 ccttatgtttaatggggtctcacaattaagttacacttaatgtt 3132748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 10234244 - 10234179
Alignment:
Q  104 ttatgtttaatggggtctcacaattaagttatacttaatgttccattaaacggactaactattcta 169  Q
    |||||||||||||  |||||  ||||||||||| |||||| | |||||||||||||||||||||||    
T  10234244 ttatgtttaatggaatctcatgattaagttatatttaatggttcattaaacggactaactattcta 10234179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 18258087 - 18258143
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||| |||||| ||||||||| |||||||||||| |||||||| |||||||    
T  18258087 catgatacaaggccaaaaccaatcaatctagattggctatcagggcttactccaaca 18258143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 2653207 - 2653239
Alignment:
Q  187 aaacaaaacaaaatcaataaagaaatgccttgt 219  Q
    |||||||||||||||||||||||||||||||||    
T  2653207 aaacaaaacaaaatcaataaagaaatgccttgt 2653239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 18560969 - 18560913
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||| ||||||||| |||||||| || | |||||||| |||||||    
T  18560969 catgatacaaagccaagcccaatcaacatagattgcctttaagggcttactccaaca 18560913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 455
Target Start/End: Original strand, 7157465 - 7157529
Alignment:
Q  391 tacacatgttttgatctcgattttatagatccttgcaaagttatgctgattttgtgtgtctattt 455  Q
    ||||||| ||||||| | ||||||||| ||  |||||| ||||||||| | ||||||||||||||    
T  7157465 tacacattttttgattttgattttataaatttttgcaatgttatgctggtattgtgtgtctattt 7157529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 27381252 - 27381459
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||    
T  27381252 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaagcttgactatggatactttgagaatagtttccatatgttt 27381351  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27381352 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 27381451  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  27381452 tgccttgt 27381459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 27471635 - 27471842
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||    
T  27471635 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaagcttgactatggatactttgagaatagtttccatatgttt 27471734  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27471735 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 27471834  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  27471835 tgccttgt 27471842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 17684469 - 17684674
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  17684469 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcatcaaagcttgactacggatactttgagaatagtttccttatgttt 17684568  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17684569 aacggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 17684668  T
Q  212 tgcctt 217  Q
    ||||||    
T  17684669 tgcctt 17684674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 29309097 - 29308890
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  29309097 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttgagaatagtttccttatgttt 29308998  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29308997 aatgggctctcacaattaagttatacttaatgttccattaaatggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 29308898  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  29308897 tgccttgt 29308890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 29316057 - 29315850
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  29316057 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttgagaatagtttccttatgttt 29315958  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29315957 aatgggctctcacaattaagttatacttaatgttccattaaatggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 29315858  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  29315857 tgccttgt 29315850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 16566320 - 16566525
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||    
T  16566320 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttaagaatagtttccttatgttt 16566419  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16566420 aacggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 16566519  T
Q  212 tgcctt 217  Q
    ||||||    
T  16566520 tgcctt 16566525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 17691440 - 17691647
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| |||||||||||||||||| ||||||||||||||||||||    
T  17691440 atcatcagtctacctacataatagtctttatgctttaatgatatcccacttctcactaaagcttgactacggatactttaagaatagtttccttatgttt 17691539  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17691540 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaagaaaacaaaatcaataaagaaa 17691639  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  17691640 tgccttgt 17691647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 188977 - 189182
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||| |||||||||  ||||||| ||||||||||||||||||||    
T  188977 atcatcagtctacccacataatagtctctatgctttaatgatatctcacttctcaataaagcttgactacaaatactttaagaatagtttccttatgttt 189076  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  189077 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctaaggactttattattttgaaacaaaacaaaatcaataaagaaa 189176  T
Q  212 tgcctt 217  Q
    ||||||    
T  189177 tgcctt 189182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 25537159 - 25537364
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||    
T  25537159 atcatcagtctacctacataatagtctttatgctttaatgatatcccacttctcaataaagcttgactacgaatactttaagaatagtttccttatgttt 25537258  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25537259 aacggggtctcacaataaagttatacttaatgttccattaaacggactaattattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 25537358  T
Q  212 tgcctt 217  Q
    ||||||    
T  25537359 tgcctt 25537364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 11651930 - 11651725
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| |||||||| |||||||||||||||| |||    
T  11651930 atcatcagtctacccacataatagtctctatgctttaatgatatctcacttctcaataaagcttgactactgatacttttagaatagtttccttattttt 11651831  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  11651830 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattttagggactttattattttgaaacaaatcaaaatcaataaagaaa 11651731  T
Q  212 tgcctt 217  Q
    ||||||    
T  11651730 tgcctt 11651725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 13359269 - 13359474
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||| | | ||||||||||||| ||||||||| | ||||| ||| ||| |||  ||||||||||||||||| | |||| | |  ||||||||    
T  13359269 atcatcagtctatccatataatagtctctacgctttaatgttgtcccatttcacaataaaggttgactacggatactttaaaaataatgtttttatgttt 13359368  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||| || |||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  13359369 aatggagtttcacgattaagttatacttaatgctccattaagcgaactaactattctagggactttattattttgaaacaaaacaaaataaataaataaa 13359468  T
Q  212 tgcctt 217  Q
    ||||||    
T  13359469 tgcctt 13359474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 20553587 - 20553755
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| |||||| | ||| |||||||||||  |||| |||||| ||| |||| || ||||||||| |||| |||||| | | ||||| |||    
T  20553587 atcatcagtctaccaacataaaaatctttatgctttaattttatctcacttcacaataaaaattcactacggatgctttaagaataatattcttatattt 20553686  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttatt 180  Q
    |||||| |||||| |||||||  |||||||| || |||||||||||||| |||| |||| |||||||||    
T  20553687 aatgggatctcacgattaagtcgtacttaatatttcattaaacggactagctatcctagagactttatt 20553755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 17691683 - 17691737
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaa 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17691683 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaa 17691737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 27381495 - 27381552
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27381495 catgaaacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 27381552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 27471878 - 27471935
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27471878 catgaaacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 27471935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 29308854 - 29308797
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29308854 catgatacaaagccaaaaccaatcaatatagattggctattagggcttattccaacaa 29308797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 29315814 - 29315757
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29315814 catgatacaaagccaaaaccaatcaatatagattggctattagggcttattccaacaa 29315757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 17684712 - 17684769
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  17684712 catgatacaaagccaaacccattcaacatagattggctattagggcttattccaacaa 17684769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 11651684 - 11651630
Alignment:
Q  257 tgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  11651684 tgatacaaagccaaactcaatcaatatagattggctattagggcttactccaaca 11651630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 17850495 - 17850663
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| | |||||||||| ||| ||| |||| |||   ||||| ||| ||| |||||||| ||||| ||| |||||||| ||||| | |||    
T  17850495 atcatcagtctacccatataatagtctatatacttgaatgttatttgacttcacaa-aaagcttgactatggataatttaagaatagtgtccttgttttt 17850593  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttatta 181  Q
    ||| || | ||||||||||||  ||| ||||||||||  ||||  |||| ||||| ||||||||||||||    
T  17850594 aattggatatcacaattaagtcttacataatgttccaacaaacaaactagctattatagggactttatta 17850663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 25537405 - 25537462
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||    
T  25537405 catgatacaaagccaaactcagtcaatatagattggctattagggcttaatccaacaa 25537462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 27925961 - 27925772
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||| || | |||||||||||| | ||||| |||| ||| |||||||  || |||  |||||||  |||||||| |||||| ||| |||  ||||    
T  27925961 atcatcagtttatccacataatagtctttgtgcttcaatgctataccacttccaaataaagtttgactagagatactttaagaataattttctttagttt 27925862  T
Q  112 aatggggtctcacaattaagt--tatactta---atgttccattaaacggactaactattctagggactttattattttgaaacaaaaca 196  Q
    ||||| ||||||| |||||||   | |||||   ||||||| ||||||  ||||  ||||||| ||||||||||||||||||||||||||    
T  27925861 aatggagtctcacgattaagtcacacacttaattatgttccgttaaacatactagttattctaaggactttattattttgaaacaaaaca 27925772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 8510115 - 8509941
Alignment:
Q  27 acataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatgggg-tctcaca 125  Q
    |||||||||||| |||| ||||||| |||| || |||  || ||| ||| |||||  ||||||| | ||||   |||| || |||||||||| ||||| |    
T  8510115 acataatagtctttatgttttaatgctatctcatttcataataaagcttaactacatatactttaataatatcatcctcatatttaatgggggtctcata 8510016  T
Q  126 attaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaat 200  Q
    |||||||  ||| ||||||||||| |||  |||||| |||||||  |||||||||||||| |||||||| |||||    
T  8510015 attaagtcgtacataatgttccatcaaatagactaattattctatagactttattattttaaaacaaaataaaat 8509941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 31258065 - 31258120
Alignment:
Q  157 actaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaat 212  Q
    ||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||||    
T  31258065 actaattattttagagactttattattttgaaacaaaacaaaagcaataaagaaat 31258120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 13359512 - 13359569
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||| |||||||||| |||||||||||||||||||| |||| ||| ||||    
T  13359512 catgatacaaagtcaaacccaatgaatatagattggctattaggacttactcccacaa 13359569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 16566563 - 16566611
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggctta 303  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  16566563 catgatacaaagtcaaactcaatcaacatagattggctattagggctta 16566611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 189221 - 189280
Alignment:
Q  255 catgatacaaagccaaacccaatcaata---tagattggctattagggcttattccaaca 311  Q
    ||||||||||||||||||||||||||||   |||||||  |||||||||||| |||||||    
T  189221 catgatacaaagccaaacccaatcaatatactagattgattattagggcttactccaaca 189280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 16394484 - 16394526
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattag 297  Q
    |||||||||||| ||||| |||||||||||||||| |||||||    
T  16394484 catgatacaaagtcaaactcaatcaatatagattgtctattag 16394526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 22259925 - 22259990
Alignment:
Q  138 ttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaa 203  Q
    ||||||||  |||||| ||||||  |||| |||||| |||||||||||| |||| |||||||||||    
T  22259925 ttaatgttatattaaatggactagttattttagggagtttattattttgcaacataacaaaatcaa 22259990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 6934 - 7141
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  6934 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttgagaatagtttccttatgttt 7033  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7034 aatagggtctcacagttaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 7133  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  7134 tgccttgt 7141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 13950 - 14157
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  13950 atcatcagtctacctacataatagtctttatgctttaatgatatcccacttctcaataaagcttgactacagatactttgagaatagtttccttatgttt 14049  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14050 aatggggtctcacagttaagttatacttaatgttccattaaacggactaactattgtagggactttattattttgaaacaaaacaaaatcaataaagaaa 14149  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  14150 tgccttgt 14157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 7177 - 7234
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  7177 catgatacaaaaccaaactcaatcaatatagattggctattagggcttattccaacaa 7234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 14193 - 14249
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  14193 catgatacaaaaccaaactcaatcaatatagattggctattagggcttattccaaca 14249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 21940872 - 21940665
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  21940872 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttgagaatagtttccttatgttt 21940773  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21940772 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctaggaactttattattttgaaacaaaacaaaatcaataaagaaa 21940673  T
Q  212 tgccttgt 219  Q
    ||| ||||    
T  21940672 tgcattgt 21940665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 28555084 - 28554885
Alignment:
Q  18 agtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||    
T  28555084 agtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaagcttgactacggatacttttagaatagtttcattatgtttaatggg 28554985  T
Q  118 gtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatgcctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| ||||||||||||||||||||||||||    
T  28554984 gtctcacaattaagttatacttaatgttccattaaacggactaactattttaggtattttattattttgaaactaaacaaaatcaataaagaaatgcctt 28554885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 22171694 - 22171491
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||  |||||||    
T  22171694 atcatcagtctacctacataatagtctctatgctttaatgatattccacttctcaataaagcttgactacggatactttgagaatagtttc--tatgttt 22171597  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  22171596 aatggggtctcacaattaagttatacttaatgttccattaaacagactaactattctagggactttattattttgaaataaaacaaaatcaataaggaaa 22171497  T
Q  212 tgcctt 217  Q
    ||||||    
T  22171496 tgcctt 22171491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 6094330 - 6094129
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| | ||||||||||||||||||    
T  6094330 atcatcactctacccatataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacagatactttaaaaatagtttccttatgttt 6094231  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6094230 aacggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 6094131  T
Q  212 tg 213  Q
    ||    
T  6094130 tg 6094129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 24642856 - 24642655
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| |||||||||||||||| ||||||||||||| |||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||    
T  24642856 atcatcagtctacccacataatagtctctatactttaatgatatctcacttctcaataaagcttgactacgaatactttaagaatagtttccttatgttt 24642757  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  24642756 aacggggtctcacaattaagttatacttaatgttccattaaacggactaacaattctagggactttatgattttgaaacaaaacaaaatcaataaagaaa 24642657  T
Q  212 tg 213  Q
    ||    
T  24642656 tg 24642655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 24636987 - 24636860
Alignment:
Q  86 actttgagaatagtttccttatgtttaatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattatttt 185  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24636987 actttaagaatagtttccttatgtttaacggggtctcacaattaagttatacttaatgttccattaaaaggactaactattctagggactttattatttt 24636888  T
Q  186 gaaacaaaacaaaatcaataaagaaatg 213  Q
    |||||||||||||||||| |||||||||    
T  24636887 gaaacaaaacaaaatcaagaaagaaatg 24636860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 21940629 - 21940573
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21940629 catgatacaaagccaaaaccaatcaatatagattggctattagggcttattccaaca 21940573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 22070164 - 22070108
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22070164 catgatacaaaaccaaacccaatcaatatagattggctattagggcttattccaaca 22070108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 22171452 - 22171395
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  22171452 catgatacaaaatcaaacccaatcaatatagattggctattagggcttattccaacaa 22171395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 24642608 - 24642555
Alignment:
Q  259 atacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24642608 atacaaagccaaacccaatcaatatagattggctattagggcttactccaacaa 24642555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 6094087 - 6094031
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  6094087 catgatacaaagccaaactcaatcaatatagattggctattagggcttactccaaca 6094031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 28554847 - 28554790
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  28554847 catgatacaaagccaaacccaatcaacaaagattggctattagggcttactccaacaa 28554790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 38232380 - 38232570
Alignment:
Q  15 atcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaat 114  Q
    ||||||||||| ||| |||||| | ||||||||||   |||| |||||  ||| |||  ||||||||  ||||||| |||||| | |  ||| |||||||    
T  38232380 atcagtctacccacaaaatagtttttatgctttaagactatctcactttacaataaagtttgactacaaatactttaagaatactatt-ttacgtttaat 38232478  T
Q  115 ggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaa 207  Q
    || || |||  |||||||||||| |||   |  ||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||||||    
T  38232479 ggagtgtcatgattaagttatacctaaaaatttattaaacagactaactattctagaga-tttattattttgaaataaaacaaaatcaataaa 38232570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 32872857 - 32873019
Alignment:
Q  28 cataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatggggtctcacaat 127  Q
    |||||||||||||||||||| ||| ||||||||||| ||| ||| ||| |||||  ||| ||| | | || | ||  | | || |||| | |||||||||    
T  32872857 cataatagtctctatgctttgatgttatcccacttcacaataaatcttaactacaaatattttaatagtattgtcactcttttcaatgagatctcacaat 32872956  T
Q  128 taagttatacttaatgttccat-taaacggactaactattctagggactttattattttgaaa 189  Q
    ||||| ||||||||||||| || |||| |||  ||||||| || |||||||||||||||||||    
T  32872957 taagtcatacttaatgttctatataaatggatgaactattataaggactttattattttgaaa 32873019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 455
Target Start/End: Original strand, 40755860 - 40755938
Alignment:
Q  377 attttagcttgacgtacacatgttttgatctcgattttatagatccttgcaaagttatgctgattttgtgtgtctattt 455  Q
    ||||||||| ||| ||||||| |||| |||||||||||||||||  |||||| ||||||||| | ||||||||||||||    
T  40755860 attttagctcgacttacacatttttttatctcgattttatagatttttgcaatgttatgctggtattgtgtgtctattt 40755938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 2375085 - 2375027
Alignment:
Q  140 aatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaa 198  Q
    ||||||||||||||  |||||| |||| |||||| ||||||||||||||||||||||||    
T  2375085 aatgttccattaaattgactaattattatagggagtttattattttgaaacaaaacaaa 2375027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 10920297 - 10920234
Alignment:
Q  118 gtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttatta 181  Q
    ||||||| ||||| | ||||||||||||||||||||| |||||| ||||||||| | |||||||    
T  10920297 gtctcacgattaactcatacttaatgttccattaaacagactaattattctaggaattttatta 10920234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 2375000 - 2374946
Alignment:
Q  258 gatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||||| |||||||||| | |||   |||||||||||||||||||||    
T  2375000 gatacaaagccaaatccaatcaatacatatttattattagggcttattccaacaa 2374946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 24636642 - 24636605
Alignment:
Q  274 caatcaatatagattggctattagggcttattccaaca 311  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  24636642 caatcaatatagattggctattatggcttactccaaca 24636605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 21330248 - 21330455
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  21330248 atcatcagtccacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatactttgagaatagtttccttatgttt 21330347  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21330348 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 21330447  T
Q  212 tgccttgt 219  Q
    || |||||    
T  21330448 tgtcttgt 21330455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 18796713 - 18796506
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| ||||||||||||| ||||||||||||||| ||||||| ||| ||| ||||||||| |||| ||| |||||| | ||||||||||     
T  18796713 atcatcagtctacccacataatagtctcaatgctttaatgatataccacttcacaataaagcttgactacagataatttaagaataatatccttatgtta 18796614  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||| |||    
T  18796613 aaagaggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttgttattttgaaacaaaacaaaataaacaaataaa 18796514  T
Q  212 tgccttgt 219  Q
    | ||||||    
T  18796513 ttccttgt 18796506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 18620011 - 18619807
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||| | ||||| |||||||||||| |||||||||||  ||||||  ||| ||| |||  ||||| || |||||||| |||||| | ||||| |||||    
T  18620011 atcatcggcctacccacataatagtctatatgctttaatattatcccttttcacaataaagtttgaccacagatactttaagaataatatccttttgttt 18619912  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||| ||||| |||||||| | |||||||| |||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||| |||||||    
T  18619911 aatggg-tctcataattaagtcacacttaatgctccattaaacagactaattattatagggactttattattttgaaacaaaacaaaatcaacaaagaaa 18619813  T
Q  212 tgcctt 217  Q
    | ||||    
T  18619812 ttcctt 18619807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 19692598 - 19692737
Alignment:
Q  74 ttgactacggatactttgagaatagtttccttatgtttaatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctaggga 173  Q
    ||||||| ||||||||| |||||| |||||||  |||||||| | |||||  ||||||| |  |||||||||||||||||| |||||| |||||||||||    
T  19692598 ttgactaaggatactttaagaataatttcctttagtttaatgagatctcatgattaagtcaggcttaatgttccattaaacagactaattattctaggga 19692697  T
Q  174 ctttattattttgaaacaaaacaaaatcaataaagaaatg 213  Q
    ||| ||||||||||||||||||||||||||||||||||||    
T  19692698 cttcattattttgaaacaaaacaaaatcaataaagaaatg 19692737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 20978084 - 20977957
Alignment:
Q  27 acataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatggggtctcacaa 126  Q
    |||||||||||||||||||||| ||||||| |||||| ||  ||| |||||||||||||  ||| |||||| ||||||||| ||||||||| |||||  |    
T  20978084 acataatagtctctatgctttagtgatatctcacttcacattaaagcttgactacggatgttttaagaataatttccttatttttaatgggatctcatga 20977985  T
Q  127 ttaagttatacttaatgttccattaaac 154  Q
    |||| |||| ||||||||||||||||||    
T  20977984 ttaaattattcttaatgttccattaaac 20977957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 21330493 - 21330549
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21330493 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 21330549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 36270373 - 36270199
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| ||| |||||||| ||| |||||||| |||||| |||| ||  ||| ||||| |||||||  ||| |||||||| || || |||||    
T  36270373 atcatcagtctacccacacaatagtctttatactttaatgttatccctcttcacactaaagcttgattacggatgttttaagaatagtgtcattgtgttt 36270274  T
Q  112 aatggggtctcacaattaagttatacttaatgttcca-ttaaacggactaactattctagggactttattatttt 185  Q
    ||||  ||||||| ||||||| | ||||||  || || ||||    |||||||||||||||||||||||||||||    
T  36270273 aatgatgtctcacgattaagtcacacttaacatttcatttaagtaaactaactattctagggactttattatttt 36270199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 18822290 - 18822115
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||||||   |||||||| ||| | ||||||||||||||||||||||  |  ||| ||||| |||  ||  ||| |||||||| ||||| |||||    
T  18822290 atcatcagtctattgacataataatctatctgctttaatgatatcccacttcaaactaaagcttgattacatatgttttaagaatagtgtccttgtgttt 18822191  T
Q  112 aatggggtctcacaattaagttatacttaatgtt-ccatt-aaacggactaactattctagggactttattatttt 185  Q
    ||||| ||||||| ||||||  | ||||||| || ||||| ||||| |||||| ||||||  ||||||||||||||    
T  18822190 aatggtgtctcacgattaagccacacttaatttttccatttaaacgaactaacaattctatagactttattatttt 18822115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 377 - 455
Target Start/End: Original strand, 23689061 - 23689139
Alignment:
Q  377 attttagcttgacgtacacatgttttgatctcgattttatagatccttgcaaagttatgctgattttgtgtgtctattt 455  Q
    ||||||||| ||| |||| || ||||||||||||||||||||||  |||||| |||||| || | ||||||||||||||    
T  23689061 attttagctcgacttacatattttttgatctcgattttatagatatttgcaatgttatgatggtattgtgtgtctattt 23689139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 19692773 - 19692830
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||| ||||||| ||| |||| ||||||||||||| |||||| ||||||||    
T  19692773 catgatacaaaaccaaacctaataaatacagattggctattaaggcttactccaacaa 19692830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 12098618 - 12098705
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagt 99  Q
    ||||||||||||| |||||||||||||||||| |||| |  ||||| | |||  |  |||||||||||||| ||||||| | ||||||    
T  12098618 atcatcagtctacatacataatagtctctatgttttattactatccaatttcatattaaaacttgactacgaatactttaaaaatagt 12098705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 18796470 - 18796411
Alignment:
Q  255 catgatacaaagccaaacccaatcaa--tatagattggctattagggcttattccaacaa 312  Q
    |||||||||||||||||| |||||||  ||||||||  || |||||||||| ||||||||    
T  18796470 catgatacaaagccaaacgcaatcaatatatagattttctgttagggcttaatccaacaa 18796411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 36802664 - 36802820
Alignment:
Q  28 cataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatggggtctcacaat 127  Q
    ||||||| ||| |||||||||||| ||||||||||  ||   || ||||| |||||||  ||| |||||| | || || |||||||||   |||  ||||    
T  36802664 cataataatctatatgctttaatgttatcccactttacactgaatcttgattacggatgttttaagaataatgtcattgtgtttaatgatatcttgcaat 36802763  T
Q  128 taagttatacttaatgttcca-ttaaacggactaactattctagggactttattatt 183  Q
    ||||| | | ||||| ||||| ||||||| | ||||||||| | |||||||||||||    
T  36802764 taagtaacatttaatattccatttaaacgaattaactattcaaaggactttattatt 36802820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 7314 - 7107
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||    
T  7314 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacggatacttttagaatagtttcattatgttt 7215  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7214 aatggggtctcacaattaagttatacttaatgttctattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 7115  T
Q  212 tgccttgt 219  Q
    | ||||||    
T  7114 taccttgt 7107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 7071 - 7014
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7071 catgatgcaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 7014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 24695466 - 24695673
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||    
T  24695466 atcatcagtctacctacataatagtctctatgctttattgatatctcacttctcaataaagcttgactacggatacttttagaatagtttcattatgttt 24695565  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24695566 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 24695665  T
Q  212 tgccttgt 219  Q
    ||||||||    
T  24695666 tgccttgt 24695673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 18569863 - 18570070
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| ||| |||||||||||||||||| ||| ||||||||||||||||    
T  18569863 atcatcagtctaccaacataatagtctttatgctttaatgatattccacttctcaataaagcttgactacggatactttaagagtagtttccttatgttt 18569962  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18569963 aacggggtctcacaattaagttatacttaatgttcaattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 18570062  T
Q  212 tgccttgt 219  Q
    || |||||    
T  18570063 tgtcttgt 18570070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 19714498 - 19714703
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| ||||||| |||||| ||| ||||||| ||||||||||||    
T  19714498 atcatcagtctacccacataatagtctctatgctttaatgatatcctacttctcaataaagcttgacttcggatattttaagaatagattccttatgttt 19714597  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  19714598 aacggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattactttgaaataaaacaaaatcaataaagaaa 19714697  T
Q  212 tgcctt 217  Q
    ||||||    
T  19714698 tgcctt 19714703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 19707218 - 19707419
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| ||||||| |||||| ||| ||||||| ||||||||||||    
T  19707218 atcatcagtctacccacataatagtctctatgctttaatgatatcctacttctcaataaagcttgacttcggatattttaagaatagattccttatgttt 19707317  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  19707318 aacggggtctcacaattaagttatacttaatgttccattaaactgactaactattctagggactttattactttgaaataaaacaaaatcaataaagaaa 19707417  T
Q  212 tg 213  Q
    ||    
T  19707418 tg 19707419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 31 - 214
Target Start/End: Original strand, 27347497 - 27347679
Alignment:
Q  31 aatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatggggtctcacaattaa 130  Q
    ||||||||||||||||||||| ||||||  ||| ||| ||| |||||||||  ||||||| |||||| | |||||  |||||||||| |||||| |||||    
T  27347497 aatagtctctatgctttaatgttatcccttttcacaataaagcttgactacatatactttaagaataatgtcctttcgtttaatggg-tctcacgattaa 27347595  T
Q  131 gttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatgc 214  Q
    || | |||||||| |||||||||| || ||| ||||||| |||||||||||||||||| |||||||||||||| ||||||||||    
T  27347596 gtcacacttaatgctccattaaacagattaattattctaaggactttattattttgaatcaaaacaaaatcaacaaagaaatgc 27347679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 22547016 - 22547217
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||| ||||| | ||||||||||||||||  ||||||| |||| |||||| ||| |||  |||||| || ||||||| | |||| | ||| ||| |||    
T  22547016 atcatcggtctatccacataatagtctctatattttaatgttatctcacttcacaataaagtttgactgcgaatactttaaaaataatgtccatatattt 22547115  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||| | |||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |  ||||||||||| ||| |||||||||| |||||| |||    
T  22547116 aatgagatctcacgattaagttatacttaatgttccattaaaccgactaactattatagcggttttattattttaaaataaaacaaaatgaataaataaa 22547215  T
Q  212 tg 213  Q
    ||    
T  22547216 tg 22547217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 39538071 - 39537962
Alignment:
Q  110 ttaatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaaga 209  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||| |  |||||||||||||||||||||| ||||||    
T  39538071 ttaatgaggtctcacaattaagttatacttaatgttccattaaacgaaccaactattctaaggacttaaccattttgaaacaaaacaaaatcattaaaga 39537972  T
Q  210 aatgccttgt 219  Q
    |||| |||||    
T  39537971 aatggcttgt 39537962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 215
Target Start/End: Original strand, 17285754 - 17285935
Alignment:
Q  34 agtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatggggtctcacaattaagtt 133  Q
    ||||| |||||||||||  ||||||| ||| ||| |||  | ||||| | ||||||| |||||| | || ||  ||||| | |||| |||| |||||||     
T  17285754 agtctatatgctttaatactatcccaattcacaataaagatcgactatgaatactttaagaataatgtcatttagtttactagggtttcacgattaagtc 17285853  T
Q  134 atacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatgcc 215  Q
    | ||||||||||||||||||| |||||||||||||  |||  |||||||||||||||| ||||||||||||||| |||||||    
T  17285854 acacttaatgttccattaaacagactaactattctctggagattattattttgaaacataacaaaatcaataaataaatgcc 17285935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 24695709 - 24695766
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24695709 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 24695766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 31886640 - 31886537
Alignment:
Q  110 ttaatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaaga 209  Q
    ||||||| ||||||| |||||||  ||||| |||||| |||||| | ||||| ||||||| ||||||||||| |||||||||||||||||||| ||||||    
T  31886640 ttaatggagtctcacgattaagtcgtacttgatgttcaattaaatgaactaattattctaaggactttattaatttgaaacaaaacaaaatcactaaaga 31886541  T
Q  210 aatg 213  Q
    ||||    
T  31886540 aatg 31886537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 19714742 - 19714798
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19714742 catgatacaaagccaaacccaatcaatatagattggctattagggcttactccaaca 19714798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 18807034 - 18807175
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttcc-ttatgtt 110  Q
    ||||||||||||||  ||||||||||||||||||||| || ||||  ||||| ||| ||  ||||||||  |||||||| |||||| | ||| |||| ||    
T  18807034 atcatcagtctacccgcataatagtctctatgctttattgttatcttacttcacaataacgcttgactatagatactttaagaataatgtccattat-tt 18807132  T
Q  111 taatggggtctcacaattaagttatacttaatgttccattaaa 153  Q
    |||||| ||||||| ||||||| | ||||||||||||||||||    
T  18807133 taatggtgtctcacgattaagtcacacttaatgttccattaaa 18807175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 215
Target Start/End: Original strand, 17298907 - 17299088
Alignment:
Q  34 agtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatggggtctcacaattaagtt 133  Q
    ||||| |||||||||||  ||||||||||  ||| |||  | ||||| | ||||||| |||||| | || ||  ||||| | |||| |||| |||||||     
T  17298907 agtctatatgctttaatactatcccacttaacaataaagatcgactatgaatactttaagaataatgtcatttagtttactagggtttcacgattaagtc 17299006  T
Q  134 atacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatgcc 215  Q
      ||||||||||||||||| |||||||||||||||  |||  |||||||||  ||||| ||||||||||||||| |||||||    
T  17299007 gcacttaatgttccattaatcggactaactattctctggatattattatttataaacataacaaaatcaataaataaatgcc 17299088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 19707462 - 19707519
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  19707462 catgatacaaagccaaactcaatcaatatagattggctattagggcttactccaacaa 19707519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 27347722 - 27347778
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  27347722 catgatacaaagccaaacgcaatcaatatagattggctattagggcttactccaaca 27347778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 39538793 - 39538701
Alignment:
Q  14 catcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttcctta 106  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||||| ||| ||| ||| |||| ||||| ||| |||||||| ||||||    
T  39538793 catcagtctacccacataatagtcttcatgctttaatgatatcccacttcacaataaagcttaactatggatattttaagaatagtgtcctta 39538701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 33477389 - 33477479
Alignment:
Q  103 cttatgtttaatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaa 193  Q
    |||||| |||||| |||||||| ||||  | | |||||||| |||||||| | | ||||||||| || |||||||||||||||||||||||    
T  33477389 cttatgattaatgaggtctcacgattagatcacacttaatgatccattaatcagcctaactattgtaaggactttattattttgaaacaaa 33477479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 18570108 - 18570165
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||||||||| |||||||||| |||||||| ||||| || |||||    
T  18570108 catgatacaaagccaaacccaattaatatagattagctattagagcttactcgaacaa 18570165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 39537925 - 39537870
Alignment:
Q  256 atgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||| |||| || |||| |||||||||||||||||||||| |||||||    
T  39537925 atgatacaaagctaaactcagtcaacatagattggctattagggcttaatccaaca 39537870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 455
Target Start/End: Original strand, 19183638 - 19183716
Alignment:
Q  377 attttagcttgacgtacacatgttttgatctcgattttatagatccttgcaaagttatgctgattttgtgtgtctattt 455  Q
    ||||||||| ||| ||||||| ||||||||| ||||||||||||  ||||||  |||| ||| | ||||||||||||||    
T  19183638 attttagctcgacttacacattttttgatcttgattttatagatttttgcaattttatactggtattgtgtgtctattt 19183716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 11479489 - 11479420
Alignment:
Q  101 tccttatgtttaatg-gggtctcacaattaagttatacttaatgttccattaaacggactaactattcta 169  Q
    ||||||||||||||| |||||||||||| |||| | ||||||| || ||||||||  ||||| |||||||    
T  11479489 tccttatgtttaatgagggtctcacaatcaagtcacacttaatatttcattaaacacactaattattcta 11479420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 180; Significance: 6e-97; HSPs: 2)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 12 - 219
Target Start/End: Complemental strand, 1200 - 993
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||    
T  1200 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaataaagcttgactacagatactttgagaatagtttctttatgttt 1101  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1100 aatggggtctcacaattaagttatacttaatgtttcattaaacggactaactattttagggactttattattttgaaacaaaacaaaatcaataaagaaa 1001  T
Q  212 tgccttgt 219  Q
    || |||||    
T  1000 tgtcttgt 993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 957 - 901
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  957 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 25990 - 26197
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  25990 atcatcagtctacctacataatagtcgctatgctttaatgatatcccacttttcaataaagcttgactacggatactttgagaatagtttccttatgttt 26089  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26090 aatggggtctcacaattaagttatatttaatgttccattaaatggactaactattctaaggactttattattttgaaacaaaacaaaatcaataaagaaa 26189  T
Q  212 tgccttgt 219  Q
    || |||||    
T  26190 tgtcttgt 26197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 26231 - 26287
Alignment:
Q  256 atgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26231 atgatacaaagccaaacccaatcaatatagattgactattagggcttattccaacaa 26287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 5736 - 5531
Alignment:
Q  12 atcatcagtctacctacataatagtctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgttt 111  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||| |||||||||  ||||||| |||||| |||||||||||||    
T  5736 atcatcagtctacccacataatagtctttatgctttaatgatatcccacttctcaataaagcttgactacatatactttaagaataatttccttatgttt 5637  T
Q  112 aatggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaa 211  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  5636 aacggggtctcacaattaagttatacttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaaataaatcaataaagaaa 5537  T
Q  212 tgcctt 217  Q
    ||||||    
T  5536 tgcctt 5531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 5492 - 5435
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||    
T  5492 catgatacaaagccaaacccaaacaatatagattggctattagggcttacttcaacaa 5435  T

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Target: scaffold0008 (Bit Score: 138; Significance: 7e-72; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 230365 - 230545
Alignment:
Q  36 tctctatgctttaatgatatcccacttctcaacaaaacttgactacggatactttgagaatagtttccttatgtttaatggggtctcacaattaagttat 135  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||  ||||||| ||||| |||||||||||||||| |||||||||||||||||||||    
T  230365 tctctatgctttaatgatatcccacttctcaataaatcttgactacaaatactttaagaatggtttccttatgtttaa-ggggtctcacaattaagttat 230463  T
Q  136 acttaatgttccattaaacggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatgcctt 217  Q
    ||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||    
T  230464 acttaatgttccattaaacggactaactattataagaactttattattttgaaacaaaacaaaatcaataaagaaatgcctt 230545  T

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Target: scaffold0008; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 230584 - 230640
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  230584 catgatacaaagccaaacccaatcaatatagattggctattattgcttactccaaca 230640  T

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Target: scaffold0176 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 8446 - 8510
Alignment:
Q  155 ggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatgccttgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8446 ggactaactattctagggactttattattttgaaacaaaacaaaatcaataaagaaatgtcttgt 8510  T

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Target: scaffold0176; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 8546 - 8603
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8546 catgatacaaagccgaacccaatcaatatagattggctattagggcttattccaacaa 8603  T

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Target: scaffold0203 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 23769 - 23826
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23769 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 23826  T

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Target: scaffold0326 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: scaffold0326
Description:

Target: scaffold0326; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 16579 - 16522
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16579 catgatataaagccaaacccaatcaatatagattggctattagggcttattccaacaa 16522  T

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Target: scaffold0326; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 16648 - 16615
Alignment:
Q  186 gaaacaaaacaaaatcaataaagaaatgccttgt 219  Q
    ||| ||||||||||||||||||||||||||||||    
T  16648 gaancaaaacaaaatcaataaagaaatgccttgt 16615  T

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Target: scaffold0705 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0705
Description:

Target: scaffold0705; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 41 - 98
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  41 catgatacaaagccaaaatcaatcattatagattggctattagggcttattccaacaa 98  T

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Target: scaffold0637 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 9000 - 8944
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaaca 311  Q
    ||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||    
T  9000 catgatacaaagccaaacccattcaacatagattggctatttgggcttattccaaca 8944  T

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Target: scaffold0565 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 10202 - 10256
Alignment:
Q  255 catgatacaaagccaaacccaatcaatatagattggctattagggcttattccaa 309  Q
    |||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||    
T  10202 catgatacaaagtcaaactcaatcaatatagattggctattagagcttactccaa 10256  T

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Target: scaffold0565; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 200
Target Start/End: Original strand, 10127 - 10158
Alignment:
Q  169 agggactttattattttgaaacaaaacaaaat 200  Q
    ||||||||||||||||||||||||||||||||    
T  10127 agggactttattattttgaaacaaaacaaaat 10158  T

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Target: scaffold0767 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 1 - 37
Alignment:
Q  275 aatcaatatagattggctattagggcttattccaaca 311  Q
    |||||||||||||||||||||||||||||||||||||    
T  1 aatcaatatagattggctattagggcttattccaaca 37  T

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Target: scaffold0267 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 455
Target Start/End: Complemental strand, 8691 - 8615
Alignment:
Q  379 tttagcttgacgtacacatgttttgatctcgattttatagatccttgcaaagttatgctgattttgtgtgtctattt 455  Q
    ||||||| ||| |||| | ||||||||| |||||||||||||  |||||| ||||||||| | ||||||||||||||    
T  8691 tttagctcgacttacagaagttttgatcacgattttatagatttttgcaatgttatgctggtattgtgtgtctattt 8615  T

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Target: scaffold0170 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 5930 - 5877
Alignment:
Q  259 atacaaagccaaacccaatcaatatagattggctattagggcttattccaacaa 312  Q
    |||||||| ||||| ||||||||||||||||||||||| | |||| ||||||||    
T  5930 atacaaagtcaaactcaatcaatatagattggctattatgacttactccaacaa 5877  T

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Target: scaffold0650 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 452
Target Start/End: Original strand, 6516 - 6591
Alignment:
Q  377 attttagcttgacgtacacatgttttgatctcgattttatagatccttgcaaagttatgctgattttgtgtgtcta 452  Q
    |||||||||  || ||||| | |||| |||||||||||||||||  |||||| ||||||||| | |||||||||||    
T  6516 attttagctcaacttacacttttttttatctcgattttatagatttttgcaatgttatgctggtattgtgtgtcta 6591  T

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Target: scaffold0032 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 92267 - 92194
Alignment:
Q  118 gtctcacaattaagttatacttaatgttcca-ttaaacggactaactattctagggactttattattttgaaac 190  Q
    ||||||| ||||||||||||||||||||||| |||||   ||||  |||||||| |||||||||| ||| ||||    
T  92267 gtctcacgattaagttatacttaatgttccatttaaaataactagatattctagagactttattactttaaaac 92194  T

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Target: scaffold0453 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 455
Target Start/End: Original strand, 9396 - 9460
Alignment:
Q  391 tacacatgttttgatctcgattttatagatccttgcaaagttatgctgattttgtgtgtctattt 455  Q
    ||||||| ||||||| | ||||||||| ||  |||||| ||||||||| | ||||||||||||||    
T  9396 tacacattttttgattttgattttataaatttttgcaatgttatgctggtattgtgtgtctattt 9460  T

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