View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16921_low_9 (Length: 496)

Name: NF16921_low_9
Description: NF16921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16921_low_9
NF16921_low_9
[»] chr7 (2 HSPs)
chr7 (1-483)||(17293700-17294182)
chr7 (1-189)||(6612165-6612353)
[»] chr1 (1 HSPs)
chr1 (1-229)||(26087342-26087570)
[»] chr3 (2 HSPs)
chr3 (1-207)||(4819029-4819235)
chr3 (74-129)||(48730095-48730150)
[»] chr8 (10 HSPs)
chr8 (1-182)||(14726521-14726702)
chr8 (105-422)||(27712388-27712705)
chr8 (5-184)||(15329152-15329331)
chr8 (5-184)||(15509521-15509700)
chr8 (14-184)||(28865257-28865427)
chr8 (137-390)||(24508494-24508747)
chr8 (1-172)||(26088385-26088556)
chr8 (1-172)||(30648092-30648263)
chr8 (86-184)||(29552092-29552190)
chr8 (128-268)||(31075663-31075803)


Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 17294182 - 17293700
Alignment:
Q  1 ttcatttgcttggaagctaaatccgcaaggattctgccccattcatctcgctatgcaaaatgaccaaaagaggatggtttctcgctttgttgacattaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17294182 ttcatttgcttggaagctaaatccgcaaggattctgccccattcatctcgctatgcaaaatgaccaaaagaggatggtttctcgctttgttgacattaat 17294083  T
Q  101 aaagaccttgttcgagttcaagggagagaaggcttaactcctcttcattttgcaagtcaaattggtgaggttgaacttttagctaaattgctttttgctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17294082 aaagaccttgttcgagttcaagggagagaaggcttaactcctcttcattttgcaagtcaaattggtgaggttgaacttttagctaaattactttttgctt 17293983  T
Q  201 gtccggattccattcaagatgtgactgtgggaggggaaactgcactgcatattgcggtgaaaaataaaaactttgaggctcttcatctccttgtttgctt 300  Q
    ||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17293982 gtccgaattccattcaagatgtgactgtggggggtgaaactgcactgcatattgcggtgaaaaataaaaactttgaggctcttcatctccttgtttgctt 17293883  T
Q  301 tcttaggaaaaatatcgaaagaggtgctagagagtttgaatataacatactaaatcacaaggatgaggatgacaacaccattttgcacatttccgcgcta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17293882 tcttaggaaaaatatcgaaagaggtgctagagagtttgaatataacatactaaatcacaaggatgaggatgacaacaccattttgcacatttccgcgcta 17293783  T
Q  401 tgtatcgagccacaggtaacctcctgtcgtatatttagaagtttctcttacgagtaaattatatttgagcatatttaaacttc 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17293782 tgtatcgagccacaggtaacctcctgtcgtatatttagaagtttctcttacgagtaaattatattcgagcatatttaaacttc 17293700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 6612353 - 6612165
Alignment:
Q  1 ttcatttgcttggaagctaaatccgcaaggattctgccccattcatctcgctatgcaaaatgaccaaaagaggatggtttctcgctttgttgacattaat 100  Q
    ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| ||| ||||||||  |  |||||| | |||| ||  |||| |||    
T  6612353 ttcatttgcttggaagctaaacccgcaaggattcagccccatccatctcgctatgctaaacgaccaaaaacgtctggtttattgcttcgtgaacatcaat 6612254  T
Q  101 aaagaccttgttcgagttcaagggagagaaggcttaactcctcttcattttgcaagtcaaattggtgaggttgaacttttagctaaatt 189  Q
    |||||||||||| || ||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6612253 aaagaccttgttagaattcaaggaaaagaagccataactcctcttcattttgcaagtcaaattggtgaggttgatcttttagctaaatt 6612165  T

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Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 26087570 - 26087342
Alignment:
Q  1 ttcatttgcttggaagctaaatccgcaaggattctgccccattcatctcgctatgcaaaatgaccaaaagaggatggtttctcgctttgttgacattaat 100  Q
    ||||| ||||||||| ||||||| |||||||||| | ||||| ||||| ||||||||||||| |||||||||  | || ||||  |||||  |||| |||    
T  26087570 ttcatatgcttggaaactaaatcagcaaggattcagtcccatccatcttgctatgcaaaatggccaaaagagtttcgtgtctcaatttgtgaacatcaat 26087471  T
Q  101 aaagaccttgttcgagttcaagggagagaaggcttaactcctcttcattttgcaagtcaaattggtgaggttgaacttttagctaaattgctttttgctt 200  Q
    ||||| |||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| ||  |||  |    
T  26087470 aaagaacttgttagagttcaaggaagagaaggcttaactgctcttcattttgcaagtcaaattggagaggttgaccttttagctaaattcctccttgtat 26087371  T
Q  201 gtccggattccattcaagatgtgactgtg 229  Q
    ||||  ||||||||  |||||||||||||    
T  26087370 gtcctaattccattagagatgtgactgtg 26087342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 4819029 - 4819235
Alignment:
Q  1 ttcatttgcttggaagctaaatccgcaaggattctgccccattcatctcgctatgcaaaatgaccaaaagaggatggtttctcgctttgttgacattaat 100  Q
    |||||||||||||||||||||||  ||||||||| | || || ||||| |||||||||||  ||||||| || |||||| ||||||||||  || | |||    
T  4819029 ttcatttgcttggaagctaaatcaacaaggattcagtcctatccatcttgctatgcaaaacaaccaaaacagtatggttactcgctttgtgaacttcaat 4819128  T
Q  101 aaagaccttgttcgagttcaagggagagaaggcttaactcctcttcattttgcaagtcaaattggtgaggttgaacttttagctaaattgctttttgctt 200  Q
    || ||||||||| ||||| |||| ||| | ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| || || |||||||    
T  4819129 aaggaccttgttagagttgaaggaagaaatggcataactcctcttcattttgcaagtcaaattggcgaggttgaacttttagctaattttctctttgctt 4819228  T
Q  201 gtccgga 207  Q
    |||||||    
T  4819229 gtccgga 4819235  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 48730150 - 48730095
Alignment:
Q  74 atggtttctcgctttgttgacattaataaagaccttgttcgagttcaagggagaga 129  Q
    ||||||| ||||||||| || ||||||||||||||||| |||||  ||||||||||    
T  48730150 atggtttgtcgctttgtagatattaataaagaccttgtccgagtcaaagggagaga 48730095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 5e-48; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 14726521 - 14726702
Alignment:
Q  1 ttcatttgcttggaagctaaatccgcaaggattctgccccattcatctcgctatgcaaaatgaccaaaagaggatggtttctcgctttgttgacattaat 100  Q
    ||||||||||||||||||| ||| |||||||||| ||||||| ||||||||| |||||||  |||||||    ||||| | ||||||||| ||||| |||    
T  14726521 ttcatttgcttggaagctagatctgcaaggattcagccccatccatctcgctttgcaaaacaaccaaaaacctatggtgtatcgctttgtggacatcaat 14726620  T
Q  101 aaagaccttgttcgagttcaagggagagaaggcttaactcctcttcattttgcaagtcaaattggtgaggttgaacttttag 182  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  14726621 aaagaccttgttagagttaaaggaagagaaggcttaactcctcttcatttcgcaagtcaaaatggtgaggttgatcttttag 14726702  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 105 - 422
Target Start/End: Original strand, 27712388 - 27712705
Alignment:
Q  105 accttgttcgagttcaagggagagaaggcttaactcctcttcattttgcaagtcaaattggtgaggttgaacttttagctaaattgctttttgcttgtcc 204  Q
    |||||||  ||||| |||| |||||||| |  ||||||| ||||||||||||||| | ||  || ||||| ||||||||||| || ||| ||||||||||    
T  27712388 accttgtcagagttaaaggaagagaaggttggactcctcctcattttgcaagtcataatgaagaagttgaccttttagctaagttccttgttgcttgtcc 27712487  T
Q  205 ggattccattcaagatgtgactgtgggaggggaaactgcactgcatattgcggtgaaaaataaaaactttgaggctcttcatctccttgtttgctttctt 304  Q
     ||||| ||| |||| ||||||||| | || || ||||| |||||||| ||  |||||||||| || ||  |||| ||| |||| |||||||| ||||||    
T  27712488 tgattctattgaagacgtgactgtgaggggtgagactgctctgcatatagctttgaaaaataacaaattcaaggcccttgatcttcttgtttgttttctt 27712587  T
Q  305 aggaaaaatatcgaaagaggtgctagagagtttgaatataacatactaaatcacaaggatgaggatgacaacaccattttgcacatttccgcgctatgta 404  Q
    | || |||||   | |||| ||| ||| |||| |||||||  | ||||||||| |||||||||||||||||||| ||| |||||||||| ||||||||||    
T  27712588 aagagaaataggaagagagatgcaagaaagttagaatatagaacactaaatcagaaggatgaggatgacaacactattctgcacatttcagcgctatgta 27712687  T
Q  405 tcgagccacaggtaacct 422  Q
     ||||||| |||||||||    
T  27712688 acgagccaaaggtaacct 27712705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 5 - 184
Target Start/End: Original strand, 15329152 - 15329331
Alignment:
Q  5 tttgcttggaagctaaatccgcaaggattctgccccattcatctcgctatgcaaaatgaccaaaagaggatggtttctcgctttgttgacattaataaag 104  Q
    |||||||  ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||   |||||| | |||||||||  | || || ||||    
T  15329152 tttgctttaaagctaaatccgcaaggattcagccccatccatctcgctatgcaaaatgaccaaaaacagatggtgtatcgctttgtaaaaatcaacaaag 15329251  T
Q  105 accttgttcgagttcaagggagagaaggcttaactcctcttcattttgcaagtcaaattggtgaggttgaacttttagct 184  Q
    |||||||| |||||  |||  |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  15329252 accttgttagagttataggacgagacggcttaactcctcttcattttgcaagccaaattggtgaggttgatcttttagct 15329331  T

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Target: chr8; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 5 - 184
Target Start/End: Original strand, 15509521 - 15509700
Alignment:
Q  5 tttgcttggaagctaaatccgcaaggattctgccccattcatctcgctatgcaaaatgaccaaaagaggatggtttctcgctttgttgacattaataaag 104  Q
    |||||||  ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||   |||||| | |||||||||  | || || ||||    
T  15509521 tttgctttaaagctaaatccgcaaggattcagccccatccatctcgctatgcaaaatgaccaaaaacagatggtgtatcgctttgtaaaaatcaacaaag 15509620  T
Q  105 accttgttcgagttcaagggagagaaggcttaactcctcttcattttgcaagtcaaattggtgaggttgaacttttagct 184  Q
    |||||||| |||||  |||  |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  15509621 accttgttagagttataggacgagacggcttaactcctcttcattttgcaagccaaattggtgaggttgatcttttagct 15509700  T

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Target: chr8; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 28865257 - 28865427
Alignment:
Q  14 aagctaaatccgcaaggattctgccccattcatctcgctatgcaaaatgaccaaaagaggatggtttctcgctttgttgacattaataaagaccttgttc 113  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||   |||||| | |||||||||  | || || ||||||||||||     
T  28865257 aagctaaatccgcaaggattcagccccatccatctcgctatgcaaaatgaccaaaaacagatggtgtatcgctttgtaaaaatcaacaaagaccttgtta 28865356  T
Q  114 gagttcaagggagagaaggcttaactcctcttcattttgcaagtcaaattggtgaggttgaacttttagct 184  Q
    |||||  |||  |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  28865357 gagttagaggacgagacggcttaactcctcttcattttgcaagccaaattggtgaggttgatcttttagct 28865427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 137 - 390
Target Start/End: Original strand, 24508494 - 24508747
Alignment:
Q  137 actcctcttcattttgcaagtcaaattggtgaggttgaacttttagctaaattgctttttgcttgtccggattccattcaagatgtgactgtgggagggg 236  Q
    ||||||||||||||||||||||||| |||||||| |||| ||||||||||| | || ||||||||||| || |||||| |||| || |||||| | ||      
T  24508494 actcctcttcattttgcaagtcaaaatggtgaggatgaaattttagctaaactcctctttgcttgtccagaatccattgaagacgtaactgtgaggggta 24508593  T
Q  237 aaactgcactgcatattgcggtgaaaaataaaaactttgaggctcttcatctccttgtttgctttcttaggaaaaatatcgaaagaggtgctagagagtt 336  Q
    | |||||| |||||||||| ||| |||||||  | | ||||| |||| | ||||| ||||||||||| | |||||||| | | |||||||| ||  | ||    
T  24508594 agactgcattgcatattgctgtgcaaaataaccagtatgaggttcttaaactcctagtttgctttctcaagaaaaataccaagagaggtgcaaggaaatt 24508693  T
Q  337 tgaatataacatactaaatcacaaggatgaggatgacaacaccattttgcacat 390  Q
     |||||||| || |||||||| |||||||||  || ||||||||||||||||||    
T  24508694 agaatataaaattctaaatcaaaaggatgagattggcaacaccattttgcacat 24508747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 26088385 - 26088556
Alignment:
Q  1 ttcatttgcttggaagctaaatccgcaaggattctgccccattcatctcgctatgcaaaatgaccaaaagaggatggtttctcgctttgttgacattaat 100  Q
    ||||||||| ||||||||||| |||||||||||| | ||||| ||||||||||||||||| | ||||||||| ||||| | ||  ||| |  |||  |||    
T  26088385 ttcatttgcatggaagctaaacccgcaaggattcagtcccatccatctcgctatgcaaaacggccaaaagagtatggtgtttcattttctgcacaacaat 26088484  T
Q  101 aaagaccttgttcgagttcaagggagagaaggcttaactcctcttcattttgcaagtcaaattggtgaggtt 172  Q
    |||||||||||| || || |||| ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  26088485 aaagaccttgttagaattaaaggaagagaaggtataactcctcttcattttgcaagtcaaattggtgaggtt 26088556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 30648092 - 30648263
Alignment:
Q  1 ttcatttgcttggaagctaaatccgcaaggattctgccccattcatctcgctatgcaaaatgaccaaaagaggatggtttctcgctttgttgacattaat 100  Q
    ||||||||||| |||| ||||||| ||||||||| ||||||| |||||||| ||||||||  || ||||  | ||||| | || ||||||   ||| |||    
T  30648092 ttcatttgctttgaagttaaatccacaaggattcagccccatccatctcgcaatgcaaaagaacaaaaaacgtatggtgtatcactttgtgagcatcaat 30648191  T
Q  101 aaagaccttgttcgagttcaagggagagaaggcttaactcctcttcattttgcaagtcaaattggtgaggtt 172  Q
    |||||||||||| |||||  ||| ||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  30648192 aaagaccttgttagagttagaggaagagaaggcataactcctcttcattttgcatgtcaaaatggtgaggtt 30648263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 86 - 184
Target Start/End: Original strand, 29552092 - 29552190
Alignment:
Q  86 tttgttgacattaataaagaccttgttcgagttcaagggagagaaggcttaactcctcttcattttgcaagtcaaattggtgaggttgaacttttagct 184  Q
    ||||||||||| || || ||||||||  ||||| ||||||  |||||||| ||||||||||||| |||||| |||||||| |||||||| |||||||||    
T  29552092 tttgttgacatgaacaaggaccttgtcagagttaaagggaaggaaggcttgactcctcttcattatgcaagccaaattggagaggttgaccttttagct 29552190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 268
Target Start/End: Complemental strand, 31075803 - 31075663
Alignment:
Q  128 gaaggcttaactcctcttcattttgcaagtcaaattggtgaggttgaacttttagctaaattgctttttgcttgtccggattccattcaagatgtgactg 227  Q
    ||||| ||||||||||||||| ||||  |||||| ||| || ||||| ||| ||||||| || || |||| ||||||  |||| || |||||||| ||||    
T  31075803 gaaggtttaactcctcttcatattgcttgtcaaaatggagaagttgaccttgtagctaatttcctatttgtttgtccaaattcgatccaagatgttactg 31075704  T
Q  228 tgggaggggaaactgcactgcatattgcggtgaaaaataaa 268  Q
    || | || || |||||||| ||| ||||  | |||||||||    
T  31075703 tgaggggtgagactgcacttcatgttgctataaaaaataaa 31075663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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