View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16922_high_7 (Length: 344)

Name: NF16922_high_7
Description: NF16922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16922_high_7
NF16922_high_7
[»] chr4 (3 HSPs)
chr4 (19-332)||(2629014-2629330)
chr4 (182-218)||(875196-875232)
chr4 (181-217)||(14075154-14075190)
[»] chr7 (4 HSPs)
chr7 (179-219)||(21403671-21403711)
chr7 (188-217)||(46536700-46536729)
chr7 (183-219)||(2850707-2850743)
chr7 (188-220)||(25155399-25155431)
[»] chr8 (3 HSPs)
chr8 (184-219)||(24201612-24201647)
chr8 (183-218)||(37938884-37938919)
chr8 (188-218)||(4053123-4053153)
[»] chr6 (3 HSPs)
chr6 (179-218)||(33858281-33858320)
chr6 (189-218)||(5171825-5171854)
chr6 (188-217)||(26570234-26570263)
[»] chr1 (9 HSPs)
chr1 (188-219)||(51489595-51489626)
chr1 (183-217)||(35789487-35789521)
chr1 (183-221)||(43226674-43226712)
chr1 (188-221)||(33853040-33853073)
chr1 (188-221)||(33927845-33927878)
chr1 (188-221)||(34151211-34151244)
chr1 (188-217)||(37483753-37483782)
chr1 (185-217)||(18302510-18302542)
chr1 (179-219)||(39710656-39710696)
[»] chr5 (3 HSPs)
chr5 (183-217)||(9509101-9509135)
chr5 (180-217)||(35240497-35240534)
chr5 (188-217)||(40360311-40360340)
[»] chr3 (6 HSPs)
chr3 (180-218)||(29458348-29458386)
chr3 (188-217)||(34744739-34744768)
chr3 (189-217)||(8150692-8150720)
chr3 (179-219)||(30577698-30577738)
chr3 (182-218)||(33098349-33098385)
chr3 (179-219)||(47360910-47360950)
[»] scaffold0026 (1 HSPs)
scaffold0026 (179-220)||(3446-3487)
[»] chr2 (2 HSPs)
chr2 (189-221)||(16675384-16675416)
chr2 (182-218)||(34131315-34131351)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 2629014 - 2629330
Alignment:
Q  19 gatcaatccatagatatcaatataaaataaccaggcacattcacatcaattgtaaccctgtttt--ttctacttctctatctaatttgtgctcacattaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||    
T  2629014 gatcaatccatagatatcaatataaaataaccaggcacattcacatcaattgtaaccctgttttttttctacttctctatctaatttgtgctcacactaa 2629113  T
Q  117 tggtgatgagaggcattgtttcatattaccattaccattttatgaaaatctaaatattagacaaataaagtgttaaatatatttttggtctctataaata 216  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2629114 tggtgatgagaggcattgtttcatattaccattaccattttgtgaaaatctaaatattagacaaataaagtgttaaacatatttttggtctctataaata 2629213  T
Q  217 tattagtctccctaaannnnnnnnncgatttatagtccttcnnnnnnnnnttatcacca-ttttaatttctatttttaagtcaactcatctttatcattt 315  Q
    |||||||||||||||          |||||| |||||||||         |||||| || ||||| ||||||||||||||||||||||||||||||||||    
T  2629214 tattagtctccctaattttttttttcgatttttagtccttcaaaaaatttttatcatcacttttagtttctatttttaagtcaactcatctttatcattt 2629313  T
Q  316 aaaataattttgatttt 332  Q
    |||||||||||||||||    
T  2629314 aaaataattttgatttt 2629330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 875232 - 875196
Alignment:
Q  182 taaagtgttaaatatatttttggtctctataaatata 218  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  875232 taaagggttaaatatgtttttggtctctataaatata 875196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 14075154 - 14075190
Alignment:
Q  181 ataaagtgttaaatatatttttggtctctataaatat 217  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  14075154 ataaagagttaaatatatttttggtccctataaatat 14075190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 21403711 - 21403671
Alignment:
Q  179 aaataaagtgttaaatatatttttggtctctataaatatat 219  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  21403711 aaataaatggttaaatatatttttggtctctataaatatat 21403671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 217
Target Start/End: Complemental strand, 46536729 - 46536700
Alignment:
Q  188 gttaaatatatttttggtctctataaatat 217  Q
    ||||||||||||||||||||||||||||||    
T  46536729 gttaaatatatttttggtctctataaatat 46536700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 2850743 - 2850707
Alignment:
Q  183 aaagtgttaaatatatttttggtctctataaatatat 219  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  2850743 aaagggttaaatatatttttggtccctataaatatat 2850707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 25155431 - 25155399
Alignment:
Q  188 gttaaatatatttttggtctctataaatatatt 220  Q
    |||||||||||||||| ||||||||||||||||    
T  25155431 gttaaatatatttttgatctctataaatatatt 25155399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 24201647 - 24201612
Alignment:
Q  184 aagtgttaaatatatttttggtctctataaatatat 219  Q
    ||||||||||||| ||||||||||||||||||||||    
T  24201647 aagtgttaaatatgtttttggtctctataaatatat 24201612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 37938884 - 37938919
Alignment:
Q  183 aaagtgttaaatatatttttggtctctataaatata 218  Q
    |||| |||||||||||||||||||||||||||||||    
T  37938884 aaagggttaaatatatttttggtctctataaatata 37938919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 218
Target Start/End: Original strand, 4053123 - 4053153
Alignment:
Q  188 gttaaatatatttttggtctctataaatata 218  Q
    |||||||||||||||||||||||||||||||    
T  4053123 gttaaatatatttttggtctctataaatata 4053153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 33858281 - 33858320
Alignment:
Q  179 aaataaagtgttaaatatatttttggtctctataaatata 218  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  33858281 aaataaagggttaaatatatttttggtccctataaatata 33858320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 218
Target Start/End: Complemental strand, 5171854 - 5171825
Alignment:
Q  189 ttaaatatatttttggtctctataaatata 218  Q
    ||||||||||||||||||||||||||||||    
T  5171854 ttaaatatatttttggtctctataaatata 5171825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 217
Target Start/End: Complemental strand, 26570263 - 26570234
Alignment:
Q  188 gttaaatatatttttggtctctataaatat 217  Q
    ||||||||||||||||||||||||||||||    
T  26570263 gttaaatatatttttggtctctataaatat 26570234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 219
Target Start/End: Original strand, 51489595 - 51489626
Alignment:
Q  188 gttaaatatatttttggtctctataaatatat 219  Q
    ||||||||||||||||||||||||||||||||    
T  51489595 gttaaatatatttttggtctctataaatatat 51489626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 35789487 - 35789521
Alignment:
Q  183 aaagtgttaaatatatttttggtctctataaatat 217  Q
    |||| ||||||||||||||||||||||||||||||    
T  35789487 aaagggttaaatatatttttggtctctataaatat 35789521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 43226674 - 43226712
Alignment:
Q  183 aaagtgttaaatatatttttggtctctataaatatatta 221  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  43226674 aaagggttaaatatgtttttggtctctataaatatatta 43226712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 33853040 - 33853073
Alignment:
Q  188 gttaaatatatttttggtctctataaatatatta 221  Q
    ||||||||| ||||||||||||||||||||||||    
T  33853040 gttaaatatgtttttggtctctataaatatatta 33853073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 33927878 - 33927845
Alignment:
Q  188 gttaaatatatttttggtctctataaatatatta 221  Q
    ||||||||| ||||||||||||||||||||||||    
T  33927878 gttaaatatgtttttggtctctataaatatatta 33927845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 34151211 - 34151244
Alignment:
Q  188 gttaaatatatttttggtctctataaatatatta 221  Q
    ||||||||| ||||||||||||||||||||||||    
T  34151211 gttaaatatgtttttggtctctataaatatatta 34151244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 217
Target Start/End: Original strand, 37483753 - 37483782
Alignment:
Q  188 gttaaatatatttttggtctctataaatat 217  Q
    ||||||||||||||||||||||||||||||    
T  37483753 gttaaatatatttttggtctctataaatat 37483782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 18302542 - 18302510
Alignment:
Q  185 agtgttaaatatatttttggtctctataaatat 217  Q
    ||||||||||||||||||||||| |||||||||    
T  18302542 agtgttaaatatatttttggtctatataaatat 18302510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 39710656 - 39710696
Alignment:
Q  179 aaataaagtgttaaatatatttttggtctctataaatatat 219  Q
    |||| ||||||||||||| ||| ||||||||||||||||||    
T  39710656 aaattaagtgttaaatatgtttgtggtctctataaatatat 39710696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 9509101 - 9509135
Alignment:
Q  183 aaagtgttaaatatatttttggtctctataaatat 217  Q
    |||| ||||||||||||||||||||||||||||||    
T  9509101 aaagggttaaatatatttttggtctctataaatat 9509135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 35240534 - 35240497
Alignment:
Q  180 aataaagtgttaaatatatttttggtctctataaatat 217  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  35240534 aataaagggttaaatatatttttggtccctataaatat 35240497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 217
Target Start/End: Original strand, 40360311 - 40360340
Alignment:
Q  188 gttaaatatatttttggtctctataaatat 217  Q
    ||||||||||||||||||||||||||||||    
T  40360311 gttaaatatatttttggtctctataaatat 40360340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 29458348 - 29458386
Alignment:
Q  180 aataaagtgttaaatatatttttggtctctataaatata 218  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  29458348 aataaagggttaaatatatttttggtccctataaatata 29458386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 217
Target Start/End: Original strand, 34744739 - 34744768
Alignment:
Q  188 gttaaatatatttttggtctctataaatat 217  Q
    ||||||||||||||||||||||||||||||    
T  34744739 gttaaatatatttttggtctctataaatat 34744768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 8150692 - 8150720
Alignment:
Q  189 ttaaatatatttttggtctctataaatat 217  Q
    |||||||||||||||||||||||||||||    
T  8150692 ttaaatatatttttggtctctataaatat 8150720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 30577738 - 30577698
Alignment:
Q  179 aaataaagtgttaaatatatttttggtctctataaatatat 219  Q
    |||||||| ||||||||| |||||| |||||||||||||||    
T  30577738 aaataaagggttaaatatgtttttgatctctataaatatat 30577698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 33098385 - 33098349
Alignment:
Q  182 taaagtgttaaatatatttttggtctctataaatata 218  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  33098385 taaagggttaaatatatttttggtccctataaatata 33098349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 47360950 - 47360910
Alignment:
Q  179 aaataaagtgttaaatatatttttggtctctataaatatat 219  Q
    |||||||| ||||||||| ||||||||| ||||||||||||    
T  47360950 aaataaagggttaaatatgtttttggtccctataaatatat 47360910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 3487 - 3446
Alignment:
Q  179 aaataaagtgttaaatatatttttggtctctataaatatatt 220  Q
    |||| ||| |||||||||||||||| ||||||||||||||||    
T  3487 aaattaagggttaaatatatttttgatctctataaatatatt 3446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 16675384 - 16675416
Alignment:
Q  189 ttaaatatatttttggtctctataaatatatta 221  Q
    |||||||||||||||||||||| ||||||||||    
T  16675384 ttaaatatatttttggtctctaaaaatatatta 16675416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 34131315 - 34131351
Alignment:
Q  182 taaagtgttaaatatatttttggtctctataaatata 218  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  34131315 taaagggttaaatatgtttttggtctctataaatata 34131351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University