View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16922_high_8 (Length: 340)
Name: NF16922_high_8
Description: NF16922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16922_high_8 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 2983285 - 2982971
Alignment:
| Q |
1 |
acaataaaaacaacaaagaaaaagagaactcttaacaaagagaacccttgatcaatcagtctcttgtttatgagcaagtacaaaataacacaataacaag |
100 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2983285 |
acaataaaaacaaca--gaaaaagagaactcttaacaaagagaacccttgatcaatcagtctcatgtttatgagcaagtacaaaataacacaataacaag |
2983188 |
T |
|
| Q |
101 |
aaaagaaatttaactaataatcattcacaaaatcaaaactcttaatatctagagcagccatcttcatgcatctccttcagtcttccatttcttttattga |
200 |
Q |
| |
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|||||||| |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2983187 |
aaaagaaagttaacttataatcattcagaaagtcaaaactcttaatatctagagcagccatcttcacgcatctccttcagtcttccatttcttttattga |
2983088 |
T |
|
| Q |
201 |
gcaagccagcttaacacaagcacacattaaatcagtatgatagtgcataaatcttgcaatagatcattttcaagaagataaaaagaacaaaatggtatac |
300 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2983087 |
gcaagctagcttaaaacaagcacacattaaatcagtatgatagtgcataaatcttgcaatagatcattttcaagaagataaaaagaacaaaatggtatac |
2982988 |
T |
|
| Q |
301 |
aagtaacaatattgaac |
317 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
2982987 |
aagtaacaatattgaac |
2982971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 2706201 - 2706448
Alignment:
| Q |
1 |
acaataaaaacaacaaagaaaaagagaactcttaacaaagagaacccttgatcaatcagtctcttgtttatgagcaagtacaaaataacacaataacaag |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
2706201 |
acaataaaaacaacaaagaaaa-gagaactcttaacaaagagaacccttgatcaataggtcgcttgtttatgagcaagtacaaaataacacaaaaacaag |
2706299 |
T |
|
| Q |
101 |
aaaagaaatttaactaataatcattcacaaaatcaaaactcttaatatctagagcagccatcttcatgcatctccttcagtcttccatttcttttattga |
200 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||| |||| | ||||||||||||||||||||||| |||| | ||||| ||||||||||||||||| |
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| T |
2706300 |
aaaagaaaattaactaataatcatgcagaaaataaaaaacttgaatatctagagcagccatcttcacaaatcttttccagtcctccatttcttttattga |
2706399 |
T |
|
| Q |
201 |
gcaagccagcttaacacaagcacacattaaatcagtatgatagtgcata |
249 |
Q |
| |
|
|||||| || |||||| ||||||||||||||| ||||||||| |||||| |
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|
| T |
2706400 |
gcaagctagattaacaaaagcacacattaaatgagtatgatattgcata |
2706448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 5 - 156
Target Start/End: Original strand, 2708689 - 2708839
Alignment:
| Q |
5 |
taaaaacaacaaagaaaaagagaactcttaacaaagagaacccttgatcaatcagtctcttgtttatgagcaagtacaaaataacacaataacaagaaaa |
104 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2708689 |
taaaaacaacaaagaaaa-gagaactcttaacaaagaggacccttgatcaatcagtctcttgtttatgagcaagtataaaataacacaataacaagaaaa |
2708787 |
T |
|
| Q |
105 |
gaaatttaactaataatcattcacaaaatcaaaactctt-aatatctagagca |
156 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |||| |||| ||||||||||||| |
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|
| T |
2708788 |
gaaaattaactaataatcattcagaaaat-aaaaatcttgaatatctagagca |
2708839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 158 - 284
Target Start/End: Complemental strand, 2992200 - 2992074
Alignment:
| Q |
158 |
ccatcttcatgcatctccttcagtcttccatttcttttattgagcaagccagcttaacacaagcacacattaaatcagtatgatagtgcataaatcttgc |
257 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||| ||||||| |||||||||||||||| || ||| ||| |
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|
| T |
2992200 |
ccatcttcacgcatctcctccagtcttccatgtcttttattgagccagctagcttaacacaagaacacatttaatcagtatgatagtgtatgaatattgg |
2992101 |
T |
|
| Q |
258 |
aatagatcattttcaagaagataaaaa |
284 |
Q |
| |
|
||||||||| ||| |||| ||||||| |
|
|
| T |
2992100 |
aatagatcagttttaagagtataaaaa |
2992074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 2992321 - 2992200
Alignment:
| Q |
7 |
aaaacaacaaagaaaaagagaactcttaacaaagagaacccttgatcaatcagtctcttgtttatgagcaagtacaaaataacacaataacaagaaaaga |
106 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||||||| || |||||||| |||| |
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|
| T |
2992321 |
aaaacaacagataaaaaaagaactcttaacaaagagaacccgtgatcaatcatcctc----ttatgagcaaatacaaaata--acgttaacaagacaaga |
2992228 |
T |
|
| Q |
107 |
aatttaactaataatcattcacaaaatc |
134 |
Q |
| |
|
|| || ||||||||||||||| |||||| |
|
|
| T |
2992227 |
aaattcactaataatcattcagaaaatc |
2992200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 10752802 - 10753043
Alignment:
| Q |
1 |
acaataaaaacaacaaagaa--aaagagaactcttaacaaagagaacccttgatcaatcagtctcttgtttatgagcaagtacaaaataaca----caat |
94 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| |||| ||||||| |||||||||| | ||| |
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|
| T |
10752802 |
acaataaaaacaacaacaaaggaaagagaactcttaacaaagagaacatttgatcaatcagcctctc----atgagcagatacaaaataatattaacaa- |
10752896 |
T |
|
| Q |
95 |
aacaagaaaagaaatttaactaataatcattcacaaaatcaaaactcttaatatctagagcagccatcttcatgcatctccttcagtcttccatttc-tt |
193 |
Q |
| |
|
|||||| |||||| || ||||||||||||||| |||| ||||||| | ||||||||||||||||||||||| |||||| ||||||||||||||||| || |
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|
| T |
10752897 |
aacaagctaagaaaatttactaataatcattcagaaaaccaaaact-taaatatctagagcagccatcttcacgcatctacttcagtcttccatttcttt |
10752995 |
T |
|
| Q |
194 |
ttattgagcaagc-cagcttaacacaagcacacattaaatcagtatga |
240 |
Q |
| |
|
|||| |||||||| ||||| | ||||||||||||| | ||||||||| |
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|
| T |
10752996 |
ttatcgagcaagcttagcttcaaacaagcacacatttattcagtatga |
10753043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 284
Target Start/End: Complemental strand, 18358580 - 18358454
Alignment:
| Q |
158 |
ccatcttcatgcatctccttcagtcttccatttcttttattgagcaagccagcttaacacaagcacacattaaatcagtatgatagtgcataaatcttgc |
257 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||| ||| ||| |||||||||||||||| || ||| ||| |
|
|
| T |
18358580 |
ccatcttcacgcatctcctccagtcttccatgtcttttattgagccagctagcttaacacaagaacatatttaatcagtatgatagtgtatgaatattgg |
18358481 |
T |
|
| Q |
258 |
aatagatcattttcaagaagataaaaa |
284 |
Q |
| |
|
||||||||| ||| |||| ||||||| |
|
|
| T |
18358480 |
aatagatcagttttaagagtataaaaa |
18358454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 18358706 - 18358656
Alignment:
| Q |
7 |
aaaacaacaaagaaaaagagaactcttaacaaagagaacccttgatcaatca |
58 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
18358706 |
aaaacaacagataaaaa-agaactcttaacaaagagaacccgtgatcaatca |
18358656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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