View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16922_low_1 (Length: 765)
Name: NF16922_low_1
Description: NF16922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16922_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 49272016 - 49271620
Alignment:
| Q |
18 |
gttgtagatatgtccaagtatttcagattttctaannnnnnnacgaaattggcagtgtttcggaaaatgcgttgtttccgatttccatgtgttgtaacat |
117 |
Q |
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| T |
49272016 |
gttgtagatatgtccaagtatttcagattttccaatttttttacgaaattggcagtgtttcggaaaatgcgttgtttccgatttccatgtgttgtaacat |
49271917 |
T |
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| Q |
118 |
tgatatcctagttggcaattaactttcaattaaacaaagttccgatgacttgggctctggggctcactcactggagtaaaggtagacacgtcaaggttca |
217 |
Q |
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| T |
49271916 |
tgatatcctagttggcaattaactttcaattaaacaaatttccgatgagttgggctccggggctcactccctggagtcaaggtag--acgtcaaggctca |
49271819 |
T |
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| Q |
218 |
aagtgcacatacagagatacttacaagtcactcattaaagaggtcatcacatcgatagcatgagttgaaatcacaatattgtaagtttgttgactcctta |
317 |
Q |
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| T |
49271818 |
aaatgcgcatatagagatacttacaagtcactcatcaaagagatcatcacatcgatagcatgagttgaaatcacgacattgtaagtttgttgact----- |
49271724 |
T |
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| Q |
318 |
tcaacctaatcaaccacggttt-aacaagtattgtatttataatttgttgatttga-tttaactttgttgacacacgcgcgcgcacagtcacacattgtc |
415 |
Q |
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| T |
49271723 |
----cctaatcaaccacggtttaaacaagtattgtatttataatttgttgatttgattttaactttgtcaacaca----cgcacacactcacacattgtc |
49271632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 207 - 383
Target Start/End: Complemental strand, 49273373 - 49273194
Alignment:
| Q |
207 |
gtcaaggttcaaagtgcacatacagagatactt--acaagtcactcattaaagaggtcatcacatcgatagcatgagttgaaatcacaatattgtaagtt |
304 |
Q |
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| T |
49273373 |
gtcaatgttcaaagtgcacttacaaaggtacttttataaatcactcatcaaagaggccatcacatcgatagcgtgagttgaactcacgacattgtgagtc |
49273274 |
T |
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| Q |
305 |
tgttgactccttatcaacctaatcaaccacggtttaacaagtattgtatttataatttgttgattt-gatttaactttgt |
383 |
Q |
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| T |
49273273 |
agttgactctttatcaacttaatcaaccaccgtttaacaagtattatatttataatttgttgatttggttttaactttgt |
49273194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 670 - 753
Target Start/End: Complemental strand, 49271470 - 49271387
Alignment:
| Q |
670 |
ggtgaatggaggtttaattgagtcattcaannnnnnnccttttcacctcctcaaattcaattgtatatactattgctatatatt |
753 |
Q |
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| T |
49271470 |
ggtgaatggaggtttaattgagtcattcaatttttttccttttcacctcctcaaattcaattgtttatactattgctatatatt |
49271387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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