View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16922_low_10 (Length: 282)
Name: NF16922_low_10
Description: NF16922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16922_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 34868524 - 34868276
Alignment:
| Q |
18 |
gttgtatccttcaacctttaatgttttagaggttgcagcagttgacaagct-atattacatctctatgaaactgaaattatgagagcatccagacatcca |
116 |
Q |
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| T |
34868524 |
gttgtatccttcaacctttaatgttttagaggttgcagcagttgacaagcttatattacatctctatgaaactgaaattatgagaacatccagacatcca |
34868425 |
T |
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| Q |
117 |
atggtttcaaacaaatccaaacaattgcatatatcaaaaatagaacatgtaagacaccgatgcatttgggtttctttatgattttgatgatcttggcaac |
216 |
Q |
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| T |
34868424 |
atggtttcaaacaaatccaaacaattgcatatatcaaaaatagaacatgtaagacaccgatgcatttgggtttctttatgattttgatgatcttggcaac |
34868325 |
T |
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| Q |
217 |
ttggacagatagtaatcacttattgtcaaatttgtaaaccaagtttctt |
265 |
Q |
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| T |
34868324 |
ttggacagatagtaatcacttattgtcaaatttgtaaaccaagtttctt |
34868276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 34875765 - 34875525
Alignment:
| Q |
20 |
tgtatccttcaacctttaatgttttagaggttgcagcagttgacaag-ctatattacatctctatgaaactgaaattatgagagcatccagacatccaat |
118 |
Q |
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| T |
34875765 |
tgtatcctgcaacctttaatcttttagaggttgcagcagttgacaagcctaagttacatctctatgaaactggaattatgagaataaccaggcatccaca |
34875666 |
T |
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| Q |
119 |
ggtttcaaacaaatccaaacaattgcatatatcaaaaatagaacatgtaagacaccgatgcatttgggtttctttatgattttgatgatcttggcaactt |
218 |
Q |
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| T |
34875665 |
ggtat-actcaaatccaaataattgcatagatcaaaaa---ataaagtaagacactgatgaatttggggct-tttatgattttgatgatcatggtaactt |
34875571 |
T |
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| Q |
219 |
ggacagatagtaatcacttattgtcaaatttgtaaaccaagtttct |
264 |
Q |
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| T |
34875570 |
ggacaagtagtaatcacatattgtcaactttgtgaatcaaggttct |
34875525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 34871788 - 34871717
Alignment:
| Q |
195 |
tgattttgatgatcttggcaacttggacagatagtaatcacttattgtcaaatttgtaaaccaagtttcttt |
266 |
Q |
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| T |
34871788 |
tgattttgatgatcttggtaacttggacaaatagtaatcagatattatcaaatttgtacatcaagtgtcttt |
34871717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 38381529 - 38381598
Alignment:
| Q |
22 |
tatccttcaacctttaatgttttagaggttgcagcagttgacaag-ctatattacatctctatgaaactg |
90 |
Q |
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| T |
38381529 |
tatccttcaacctttaatcttttagaaattgcagcagttgacaagcctaaaatacatctatatgaaactg |
38381598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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