View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16922_low_13 (Length: 230)

Name: NF16922_low_13
Description: NF16922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16922_low_13
NF16922_low_13
[»] chr2 (30 HSPs)
chr2 (1-214)||(2828649-2828853)
chr2 (73-214)||(36852708-36852849)
chr2 (1-64)||(6217234-6217297)
chr2 (1-64)||(14229363-14229426)
chr2 (1-64)||(16514489-16514552)
chr2 (1-64)||(38933652-38933715)
chr2 (1-64)||(14470602-14470665)
chr2 (12-64)||(16514434-16514486)
chr2 (1-64)||(29508700-29508764)
chr2 (1-64)||(6722016-6722079)
chr2 (1-64)||(29925580-29925643)
chr2 (1-47)||(15011345-15011391)
chr2 (3-56)||(32545855-32545908)
chr2 (11-64)||(33018620-33018673)
chr2 (126-214)||(45449631-45449717)
chr2 (13-64)||(9173058-9173109)
chr2 (1-64)||(37961771-37961834)
chr2 (12-64)||(29508767-29508819)
chr2 (1-64)||(14892325-14892388)
chr2 (78-175)||(18067363-18067458)
chr2 (6-64)||(24115990-24116048)
chr2 (1-46)||(2894028-2894073)
chr2 (12-60)||(6721965-6722013)
chr2 (12-60)||(15011294-15011342)
chr2 (5-47)||(37762028-37762070)
chr2 (12-48)||(2828610-2828646)
chr2 (7-47)||(14464582-14464622)
chr2 (12-64)||(24115930-24115982)
chr2 (20-64)||(32545796-32545840)
chr2 (21-57)||(39819080-39819116)
[»] chr5 (35 HSPs)
chr5 (1-64)||(2953255-2953318)
chr5 (1-64)||(3899904-3899967)
chr5 (1-64)||(16971209-16971272)
chr5 (1-64)||(29699432-29699495)
chr5 (1-64)||(19655223-19655286)
chr5 (1-64)||(12913868-12913931)
chr5 (73-198)||(24315613-24315743)
chr5 (73-198)||(24357946-24358076)
chr5 (3-64)||(2356339-2356399)
chr5 (13-64)||(291107-291158)
chr5 (5-64)||(291166-291225)
chr5 (1-64)||(2093947-2094010)
chr5 (1-64)||(28818982-28819045)
chr5 (12-64)||(19655168-19655220)
chr5 (12-60)||(29699381-29699429)
chr5 (1-64)||(30117838-30117901)
chr5 (12-62)||(12913815-12913865)
chr5 (12-64)||(16439148-16439200)
chr5 (1-64)||(26662464-26662528)
chr5 (1-64)||(26934059-26934123)
chr5 (1-48)||(16439203-16439250)
chr5 (17-66)||(32485630-32485679)
chr5 (12-64)||(1638467-1638519)
chr5 (12-64)||(19598342-19598394)
chr5 (9-60)||(7009401-7009452)
chr5 (163-214)||(16660550-16660601)
chr5 (1-47)||(16802509-16802555)
chr5 (12-53)||(3180136-3180177)
chr5 (5-42)||(38134405-38134442)
chr5 (12-48)||(3899865-3899901)
chr5 (3-51)||(14167175-14167223)
chr5 (12-48)||(16971170-16971206)
chr5 (12-60)||(17849221-17849269)
chr5 (21-57)||(29385390-29385426)
chr5 (12-64)||(30117904-30117956)
[»] chr8 (33 HSPs)
chr8 (1-64)||(5033226-5033289)
chr8 (1-64)||(35440979-35441042)
chr8 (1-64)||(10086822-10086885)
chr8 (1-64)||(33841601-33841664)
chr8 (12-64)||(35441045-35441097)
chr8 (1-64)||(5667162-5667225)
chr8 (94-214)||(13498266-13498384)
chr8 (12-64)||(5033171-5033223)
chr8 (1-57)||(31159916-31159972)
chr8 (13-64)||(5667107-5667158)
chr8 (72-186)||(13499549-13499661)
chr8 (1-62)||(39851020-39851081)
chr8 (12-60)||(2581839-2581887)
chr8 (12-64)||(8243464-8243516)
chr8 (1-57)||(8796487-8796543)
chr8 (12-64)||(22649855-22649907)
chr8 (12-64)||(33841667-33841719)
chr8 (1-48)||(34229706-34229753)
chr8 (1-48)||(34541829-34541876)
chr8 (1-51)||(37618750-37618800)
chr8 (78-207)||(42822107-42822236)
chr8 (1-49)||(35031639-35031687)
chr8 (12-64)||(43844545-43844597)
chr8 (1-64)||(6296670-6296733)
chr8 (72-119)||(24243809-24243856)
chr8 (1-64)||(45191137-45191200)
chr8 (1-47)||(8243415-8243461)
chr8 (73-150)||(104904-104981)
chr8 (12-64)||(8796432-8796484)
chr8 (12-60)||(10086771-10086819)
chr8 (141-189)||(16623001-16623049)
chr8 (128-168)||(21154208-21154248)
chr8 (12-64)||(34229651-34229703)
[»] chr6 (13 HSPs)
chr6 (1-64)||(12343165-12343228)
chr6 (3-64)||(17750969-17751030)
chr6 (1-64)||(13043522-13043585)
chr6 (1-64)||(24618611-24618674)
chr6 (1-50)||(10521873-10521922)
chr6 (12-64)||(24587471-24587523)
chr6 (72-175)||(15111730-15111832)
chr6 (11-64)||(24975762-24975815)
chr6 (12-60)||(551241-551289)
chr6 (12-48)||(31654331-31654367)
chr6 (1-48)||(551191-551238)
chr6 (13-55)||(17750921-17750963)
chr6 (4-48)||(2315330-2315374)
[»] chr4 (33 HSPs)
chr4 (1-64)||(23444279-23444342)
chr4 (1-64)||(47661907-47661970)
chr4 (1-64)||(6271767-6271830)
chr4 (1-64)||(42375075-42375138)
chr4 (1-64)||(51265510-51265573)
chr4 (1-64)||(53954675-53954738)
chr4 (12-64)||(3862622-3862674)
chr4 (12-64)||(3871379-3871431)
chr4 (12-64)||(23444345-23444397)
chr4 (12-64)||(51265455-51265507)
chr4 (1-60)||(25818387-25818446)
chr4 (1-64)||(35682231-35682294)
chr4 (1-48)||(50384131-50384178)
chr4 (1-48)||(52028614-52028661)
chr4 (1-50)||(40789244-40789293)
chr4 (12-64)||(6271712-6271764)
chr4 (12-60)||(47661856-47661904)
chr4 (1-48)||(24006096-24006143)
chr4 (1-48)||(47404611-47404658)
chr4 (1-47)||(55090023-55090069)
chr4 (3-48)||(26186042-26186087)
chr4 (1-62)||(47762673-47762734)
chr4 (12-64)||(26186090-26186142)
chr4 (12-64)||(30861850-30861902)
chr4 (1-48)||(31430487-31430534)
chr4 (22-64)||(30709986-30710028)
chr4 (12-64)||(35682176-35682228)
chr4 (12-50)||(40789203-40789241)
chr4 (14-64)||(44379940-44379990)
chr4 (1-46)||(28693951-28693996)
chr4 (20-64)||(5048884-5048928)
chr4 (7-59)||(38714894-38714946)
chr4 (16-48)||(53954636-53954668)
[»] chr3 (26 HSPs)
chr3 (1-64)||(1801456-1801519)
chr3 (1-60)||(47492061-47492120)
chr3 (5-64)||(41753033-41753092)
chr3 (3-64)||(45103119-45103180)
chr3 (1-48)||(30476500-30476547)
chr3 (1-48)||(33689241-33689288)
chr3 (12-64)||(41752974-41753026)
chr3 (12-64)||(43139785-43139837)
chr3 (12-64)||(47492123-47492175)
chr3 (126-185)||(29378713-29378772)
chr3 (1-64)||(30734412-30734475)
chr3 (1-50)||(47677279-47677328)
chr3 (12-64)||(30734478-30734530)
chr3 (12-64)||(33689186-33689238)
chr3 (12-64)||(51046149-51046201)
chr3 (1-48)||(29031740-29031787)
chr3 (1-64)||(50524767-50524830)
chr3 (1-64)||(51046083-51046146)
chr3 (20-64)||(18321661-18321705)
chr3 (3-51)||(21024117-21024165)
chr3 (12-60)||(30580832-30580880)
chr3 (5-60)||(30580770-30580825)
chr3 (1-48)||(43139735-43139782)
chr3 (1-51)||(45755128-45755178)
chr3 (1-47)||(55223297-55223343)
chr3 (128-184)||(44864549-44864605)
[»] chr1 (46 HSPs)
chr1 (1-64)||(32540758-32540821)
chr1 (1-64)||(48993927-48993990)
chr1 (1-64)||(15220876-15220939)
chr1 (1-64)||(29179607-29179670)
chr1 (1-64)||(5995434-5995497)
chr1 (1-64)||(17127574-17127637)
chr1 (12-64)||(29179673-29179725)
chr1 (1-57)||(29371433-29371489)
chr1 (12-64)||(37155056-37155108)
chr1 (12-62)||(21630054-21630104)
chr1 (1-50)||(28928803-28928852)
chr1 (3-64)||(33219640-33219701)
chr1 (12-64)||(9157320-9157372)
chr1 (12-64)||(28395647-28395699)
chr1 (12-64)||(44706860-44706912)
chr1 (12-64)||(46932007-46932059)
chr1 (12-64)||(48993993-48994045)
chr1 (1-48)||(741528-741575)
chr1 (1-48)||(4609061-4609108)
chr1 (1-48)||(37155111-37155158)
chr1 (3-46)||(46333974-46334017)
chr1 (1-50)||(8337875-8337924)
chr1 (3-48)||(38674531-38674576)
chr1 (3-64)||(49444923-49444984)
chr1 (1-48)||(1819515-1819562)
chr1 (1-48)||(34062274-34062321)
chr1 (1-48)||(47303460-47303507)
chr1 (130-184)||(28369892-28369946)
chr1 (19-64)||(36290490-36290535)
chr1 (1-50)||(48498480-48498529)
chr1 (12-64)||(1091620-1091672)
chr1 (12-64)||(5995379-5995431)
chr1 (12-64)||(17127640-17127692)
chr1 (12-60)||(32540824-32540872)
chr1 (1-48)||(44706809-44706857)
chr1 (12-64)||(45728297-45728349)
chr1 (1-45)||(45728352-45728396)
chr1 (1-36)||(1091582-1091617)
chr1 (12-63)||(4609007-4609058)
chr1 (1-48)||(48604973-48605020)
chr1 (14-48)||(48823911-48823945)
chr1 (4-57)||(12441023-12441076)
chr1 (3-48)||(19711206-19711251)
chr1 (12-48)||(29371394-29371430)
chr1 (34-62)||(33734213-33734241)
chr1 (12-48)||(49444987-49445023)
[»] chr7 (25 HSPs)
chr7 (1-62)||(4290610-4290671)
chr7 (1-64)||(11016934-11016997)
chr7 (1-64)||(42628360-42628423)
chr7 (1-55)||(15027607-15027661)
chr7 (1-63)||(48000705-48000767)
chr7 (12-64)||(11016879-11016931)
chr7 (1-64)||(48000802-48000865)
chr7 (15-64)||(45231929-45231978)
chr7 (1-48)||(41018254-41018301)
chr7 (12-62)||(27028740-27028790)
chr7 (72-197)||(32195059-32195182)
chr7 (1-50)||(4649387-4649436)
chr7 (1-50)||(29053338-29053387)
chr7 (5-50)||(34854719-34854764)
chr7 (15-64)||(41018307-41018356)
chr7 (12-64)||(34854771-34854823)
chr7 (12-64)||(38975815-38975867)
chr7 (1-48)||(7671937-7671984)
chr7 (1-64)||(38975870-38975933)
chr7 (5-62)||(41945924-41945981)
chr7 (12-56)||(22764776-22764820)
chr7 (1-44)||(27028823-27028866)
chr7 (1-50)||(10419523-10419572)
chr7 (16-64)||(4290555-4290603)
chr7 (12-60)||(27028869-27028917)
[»] scaffold0586 (2 HSPs)
scaffold0586 (1-64)||(7057-7120)
scaffold0586 (12-57)||(7123-7168)
[»] scaffold0016 (2 HSPs)
scaffold0016 (1-64)||(49713-49776)
scaffold0016 (12-48)||(49779-49815)
[»] scaffold0161 (2 HSPs)
scaffold0161 (1-64)||(27230-27293)
scaffold0161 (15-64)||(27299-27348)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-48)||(63822-63869)
[»] scaffold0022 (1 HSPs)
scaffold0022 (124-214)||(86357-86447)
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-64)||(19132-19195)
[»] scaffold0536 (1 HSPs)
scaffold0536 (3-57)||(4909-4963)
[»] scaffold1033 (1 HSPs)
scaffold1033 (1-45)||(2278-2322)
[»] scaffold1029 (1 HSPs)
scaffold1029 (1-45)||(2278-2322)
[»] scaffold0481 (1 HSPs)
scaffold0481 (1-48)||(2913-2960)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 2828649 - 2828853
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactctgtcacactagcagatagcgggatagccgctattgca 100  Q
    ||||||||||||| |||||||||||||| ||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2828649 tctctctctttcagaagcattgtgacattgtgattggccaa---------tgtcacccaactctgtcacactagcagatagcgggatagccgctattgca 2828739  T
Q  101 atgactaaaaaccggtgtaccgggtaaacataaatactcaaaaatagaaaaatacataacattaaagagaccatcctacttaataactaaagaacctaga 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2828740 atgactaaaaaccggtgtaccgagtaaacataaatactcaaaaatagaaaaatacataacattaaagagaccatcctacttaataactaaagaacctaga 2828839  T
Q  201 gtacaaagcaataa 214  Q
    ||||||||||||||    
T  2828840 gtacaaagcaataa 2828853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 36852708 - 36852849
Alignment:
Q  73 agcagatagcgggatagccgctattgcaatgactaaaaaccggtgtaccgggtaaacataaatactcaaaaatagaaaaatacataacattaaagagacc 172  Q
    ||||| |||||| ||| ||||||||||||||||||||||  |||||||   ||||||||||||||| ||| | | ||||||||| || ||||||||||||    
T  36852708 agcaggtagcggaatatccgctattgcaatgactaaaaattggtgtacaaagtaaacataaatactgaaatagacaaaaatacacaaaattaaagagacc 36852807  T
Q  173 atcctacttaataactaaagaacctagagtacaaagcaataa 214  Q
    ||| |||||||||| |||||||| || |||||||||||||||    
T  36852808 atcatacttaataattaaagaacttaaagtacaaagcaataa 36852849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6217297 - 6217234
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  6217297 tctctctctttcacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactct 6217234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 14229426 - 14229363
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||    
T  14229426 tctctctctttcacaagcattgtgacattgtgattgaccaatgtcaccaatgtcaccgaactct 14229363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 16514489 - 16514552
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||    
T  16514489 tctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatctcacccaactct 16514552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 38933652 - 38933715
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||    
T  38933652 tctctctctttcacaagcattgtgacattatgattggccaacgtcaccaatgtcacccaactct 38933715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 14470665 - 14470602
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||||||||  |||| |||||||| ||||||||||||||||||||||||||    
T  14470665 tctctctctttcacaagcattgcaacattgtgattggtcaatgtcaccaatgtcacccaactct 14470602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 16514486 - 16514434
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  16514486 cacaagcattatggcatagtgattggccaatgtcaccaatgtcacccaactct 16514434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29508764 - 29508700
Alignment:
Q  1 tctctctctttcacaagcattgtgacata-gtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||| |||  |||||||| ||||||||||||||||||||||||||    
T  29508764 tctctctctttcacaagcattgtggcatttgtgattggtcaatgtcaccaatgtcacccaactct 29508700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 6722016 - 6722079
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||| ||||||||    
T  6722016 tctctctctttcacaaacattgtgacattgtgattggccaatatcactaatgtcaaccaactct 6722079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29925643 - 29925580
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||||||| |||||| ||||  |||||||||||||||| ||||||||||||    
T  29925643 tctctctctttcacaagcattctgacattgtgaggggccaatgtcaccaatatcacccaactct 29925580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15011345 - 15011391
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcac 47  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  15011345 tctctctctttcacaagcattgtgacattgtgattggccaatgtcac 15011391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 32545855 - 32545908
Alignment:
Q  3 tctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcac 56  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  32545855 tctctctttcataagcattgtgacattatgattggccaatgtcaccaatgtcac 32545908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 33018620 - 33018673
Alignment:
Q  11 tcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  33018620 tcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactct 33018673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 45449631 - 45449717
Alignment:
Q  126 aaacataaatactcaaaaatagaaaaatacataacattaaagagaccatcctacttaataactaaagaacctagagtacaaagcaataa 214  Q
    ||||| ||||||||||||||||||||||||| |  |||||||||||  || |||| ||||| ||||||||||| |||||| ||||||||    
T  45449631 aaacacaaatactcaaaaatagaaaaatacaca--attaaagagacagtcatactcaataattaaagaacctaaagtacagagcaataa 45449717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 9173058 - 9173109
Alignment:
Q  13 acaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  9173058 acaagcattgtggcattgtgattggccaatatcaccaatgtcacccaactct 9173109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 37961771 - 37961834
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||| ||| |||||||| ||||||||| ||| |||| |||||||    
T  37961771 tctctctctttcacaagcattgtggcattgtgattggtcaatgtcacaaatatcactcaactct 37961834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 29508767 - 29508819
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||| | ||| |||||||||||||||||||||| ||||||||||||    
T  29508767 cacaagcattgcggcattgtgattggccaatgtcaccaatatcacccaactct 29508819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14892325 - 14892388
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| ||||| |||| |||||||  ||||||||||||||||| ||||||||    
T  14892325 tctctctctttcataagtattgtaacattgtgattgatcaatgtcaccaatgtcatccaactct 14892388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 18067458 - 18067363
Alignment:
Q  78 atagcgggatagccgctattgcaatgactaaaaaccggtgtaccgggtaaacataaatactcaaaaatagaaaaatacataacattaaagagaccatc 175  Q
    |||| ||||||||| ||||| |||  |||||| | | ||||||   ||||||||||||||| ||||||||||||||||  || |||||||||||||||    
T  18067458 atagtgggatagccactattccaaaaactaaatatcagtgtacaaagtaaacataaatacttaaaaatagaaaaatac--aaaattaaagagaccatc 18067363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 24115990 - 24116048
Alignment:
Q  6 ctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||| ||||| ||||||| ||||| |||| |||| |||||||||||    
T  24115990 ctctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactct 24116048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2894028 - 2894073
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtca 46  Q
    |||||||||||||||||||||||||||  ||||||| |||||||||    
T  2894028 tctctctctttcacaagcattgtgacactgtgattgaccaatgtca 2894073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 6722013 - 6721965
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaa 60  Q
    |||||||||||||| || |||||||| ||||||||||||||||| ||||    
T  6722013 cacaagcattgtgatattgtgattggtcaatgtcaccaatgtcatccaa 6721965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 15011342 - 15011294
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaa 60  Q
    ||||| ||||||| ||| ||||||||||||| |||||||||||||||||    
T  15011342 cacaaacattgtggcattgtgattggccaatatcaccaatgtcacccaa 15011294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 37762070 - 37762028
Alignment:
Q  5 tctctttcacaagcattgtgacatagtgattggccaatgtcac 47  Q
    |||||||||||||||||| ||||| |||||||| |||||||||    
T  37762070 tctctttcacaagcattgcgacattgtgattggtcaatgtcac 37762028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 2828646 - 2828610
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||| |||||| |||||||||||||||||||    
T  2828646 cacaagcattttgacattgtgattggccaatgtcacc 2828610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 14464622 - 14464582
Alignment:
Q  7 tctttcacaagcattgtgacatagtgattggccaatgtcac 47  Q
    ||||||||||| |||||||||| ||||||| ||||||||||    
T  14464622 tctttcacaagtattgtgacattgtgattgaccaatgtcac 14464582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 24115982 - 24115930
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||| ||||||| |||| ||||||||||||||| |||||||| || |||||||    
T  24115982 cacaggcattgtaacattgtgattggccaatgttaccaatgtgactcaactct 24115930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 32545840 - 32545796
Alignment:
Q  20 ttgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||| ||| ||| |||||||||||||||||||| ||||||    
T  32545840 ttgtgacatcgtggttgaccaatgtcaccaatgtcacctaactct 32545796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 39819116 - 39819080
Alignment:
Q  21 tgtgacatagtgattggccaatgtcaccaatgtcacc 57  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  39819116 tgtgacattgtggttggccaatgtcaccaatgtcacc 39819080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 2953255 - 2953318
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2953255 tctctctctttcacaagcattgtgacattgtgattggccaatgtcaccaatgtcacccaactct 2953318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3899904 - 3899967
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  3899904 tctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactct 3899967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 16971209 - 16971272
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  16971209 tctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactct 16971272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 29699432 - 29699495
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  29699432 tctctctctttcacaagcattgtgacattgtgattggccaatgtcaccaatatcacccaactct 29699495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 19655223 - 19655286
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||    
T  19655223 tctctctctttcacaagcattgtgacattgtgattggacaatgtcaccaatgtcactcaactct 19655286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12913868 - 12913931
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||||||| |||||| ||||||| ||||| |||||||||||||||||||||    
T  12913868 tctctctctttcacaagcattatgacattgtgattgaccaatatcaccaatgtcacccaactct 12913931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 24315613 - 24315743
Alignment:
Q  73 agcagatagcgggatagccgctattgcaatgactaaaaaccggtgtaccgggtaaacataaatactcaaaaat-----agaaaaatacataacattaaag 167  Q
    |||||||||| |||||||||||||||||| || |||||| | ||||||  ||||||||||||||||| |||||     | ||||||||| || |||||||    
T  24315613 agcagatagcaggatagccgctattgcaaagattaaaaatcagtgtacaaggtaaacataaatactcgaaaatatgaaataaaaatacacaaaattaaag 24315712  T
Q  168 agaccatcctacttaataactaaagaaccta 198  Q
    ||| |||| | ||| |||| |||||||||||    
T  24315713 agatcatcatgcttgataattaaagaaccta 24315743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 24357946 - 24358076
Alignment:
Q  73 agcagatagcgggatagccgctattgcaatgactaaaaaccggtgtaccgggtaaacataaatactcaaaaat-----agaaaaatacataacattaaag 167  Q
    |||||||||| |||||||||||||||||| || |||||| | ||||||  ||||||||||||||||| |||||     | ||||||||| || |||||||    
T  24357946 agcagatagcaggatagccgctattgcaaagattaaaaatcagtgtacaaggtaaacataaatactcgaaaatatgaaataaaaatacacaaaattaaag 24358045  T
Q  168 agaccatcctacttaataactaaagaaccta 198  Q
    ||| |||| | ||| |||| |||||||||||    
T  24358046 agatcatcatgcttgataattaaagaaccta 24358076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 2356339 - 2356399
Alignment:
Q  3 tctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  2356339 tctctctttcataagcattgtgacat-gtgattggccaatgtcaccaatgtcatccaactct 2356399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 291158 - 291107
Alignment:
Q  13 acaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  291158 acaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactct 291107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 291166 - 291225
Alignment:
Q  5 tctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||| ||||||||||| |||||||  ||||||||||||||||||||||||||    
T  291166 tctctttcacaaacattgtgacattgtgattgatcaatgtcaccaatgtcacccaactct 291225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2094010 - 2093947
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||||||| |||||| |||||||  ||||||||||||| ||||||||||||    
T  2094010 tctctctctttcacaagcattatgacattgtgattgatcaatgtcaccaatatcacccaactct 2093947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 28818982 - 28819045
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||||||| |||| |||||||    
T  28818982 tctctctctttcacaagcattgtgacattatgattgaccaatgtcaccaatatcactcaactct 28819045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 19655220 - 19655168
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||    
T  19655220 cacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactct 19655168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 29699429 - 29699381
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaa 60  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  29699429 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 29699381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 30117901 - 30117838
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||| ||||| || ||||||||||| |||||||| |||| |||||||||||||||||||||    
T  30117901 tctctctttttcataaacattgtgacattgtgattggtcaatatcaccaatgtcacccaactct 30117838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 12913865 - 12913815
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaact 62  Q
    |||||| |||||||||| ||||||||||||||||||||||||||| |||||    
T  12913865 cacaagaattgtgacattgtgattggccaatgtcaccaatgtcactcaact 12913815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 16439200 - 16439148
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||| ||||||| |||||||||||||| | ||||||||||    
T  16439200 cacaagcattgtgacattgtgattgaccaatgtcaccaatattacccaactct 16439148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 26662464 - 26662528
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattgg-ccaatgtcaccaatgtcacccaactct 64  Q
    ||||||| ||||||||| |||||||||| |||||| | |||||||||||||| ||||||||||||    
T  26662464 tctctctttttcacaagtattgtgacattgtgatttgaccaatgtcaccaatatcacccaactct 26662528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 26934059 - 26934123
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattgg-ccaatgtcaccaatgtcacccaactct 64  Q
    ||||||| ||||||||| |||||||||| |||||| | |||||||||||||| ||||||||||||    
T  26934059 tctctctttttcacaagtattgtgacattgtgatttgaccaatgtcaccaatatcacccaactct 26934123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16439203 - 16439250
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||||||||| |||||||  ||||||||||    
T  16439203 tctctctctttcacaagcattgtgacattgtgattgatcaatgtcacc 16439250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 32485630 - 32485679
Alignment:
Q  17 gcattgtgacatagtgattggccaatgtcaccaatgtcacccaactctgt 66  Q
    ||||||||| || |||||||  ||||||||||||||||||||||||||||    
T  32485630 gcattgtgatattgtgattgatcaatgtcaccaatgtcacccaactctgt 32485679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 1638519 - 1638467
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||| ||||||||||| ||||||||||||| |||| ||| ||||||||||||    
T  1638519 cacaaacattgtgacattgtgattggccaatatcacaaatatcacccaactct 1638467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 19598394 - 19598342
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||  || ||||||| |||||||||||||||| ||||||||||    
T  19598394 cacaagcattgtggtattgtgattgaccaatgtcaccaatgttacccaactct 19598342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 7009401 - 7009452
Alignment:
Q  9 tttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaa 60  Q
    ||||||||||||||||| || ||||||| ||||| |||||||||||| ||||    
T  7009401 tttcacaagcattgtgatattgtgattgaccaatatcaccaatgtcatccaa 7009452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 16660550 - 16660601
Alignment:
Q  163 taaagagaccatcctacttaataactaaagaacctagagtacaaagcaataa 214  Q
    ||||||||||| | ||||||||||||||||||||||   |||||||||||||    
T  16660550 taaagagaccaccatacttaataactaaagaacctaagctacaaagcaataa 16660601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16802509 - 16802555
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcac 47  Q
    ||||||||||| ||||||||||||||||  ||||||| |||||||||    
T  16802509 tctctctcttttacaagcattgtgacattctgattggtcaatgtcac 16802555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 3180136 - 3180177
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgt 53  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||    
T  3180136 cacaagcattgtggcattgtgattgaccaatgtcaccaatgt 3180177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 38134442 - 38134405
Alignment:
Q  5 tctctttcacaagcattgtgacatagtgattggccaat 42  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  38134442 tctctttcactagcattgtgacattgtgattggccaat 38134405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 3899901 - 3899865
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  3899901 cacaagcattgtggcattgtgattggccaatgtcacc 3899865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 14167223 - 14167175
Alignment:
Q  3 tctctctttcacaagcattgtgacatagtgattggccaatgtcaccaat 51  Q
    ||||||||||||||| |||||||||| |||||| | ||| |||||||||    
T  14167223 tctctctttcacaaggattgtgacattgtgattcgtcaaagtcaccaat 14167175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 16971206 - 16971170
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  16971206 cacaagcattgtggcattgtgattggccaatgtcacc 16971170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 17849221 - 17849269
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaa 60  Q
    ||||||||||| || || ||||||| |||||||||||||| ||||||||    
T  17849221 cacaagcattgcgatattgtgattgaccaatgtcaccaatatcacccaa 17849269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 29385390 - 29385426
Alignment:
Q  21 tgtgacatagtgattggccaatgtcaccaatgtcacc 57  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  29385390 tgtgacattgtggttggccaatgtcaccaatgtcacc 29385426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 30117904 - 30117956
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| |||  |||||| ||||| |||||||||||| ||||||||    
T  30117904 cacaagcattgtggcattatgattgaccaatatcaccaatgtcatccaactct 30117956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5033226 - 5033289
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  5033226 tctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactct 5033289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 35441042 - 35440979
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  35441042 tctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactct 35440979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10086822 - 10086885
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  10086822 tctctctctttcacaaacattgtgacattgtgattggtcaatgtcaccaatgtcacccaactct 10086885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 33841664 - 33841601
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  33841664 tctctctctttcacaagcattgtgacaatgtgattggtcaatgtcaccaatgtcacccaactct 33841601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 35441045 - 35441097
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  35441045 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactct 35441097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5667162 - 5667225
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| | ||||||    
T  5667162 tctctctctttcacaagcattatgacattgtaattggccaatgtcaccaatgtcatcaaactct 5667225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 214
Target Start/End: Original strand, 13498266 - 13498384
Alignment:
Q  94 tattgcaatgactaaaaaccggtgtaccgggtaaacataaatactcaaaaatagaaaaatacataacattaaagagaccatcctacttaataactaaaga 193  Q
    |||||||||||||||||| | ||||||   ||||||||| |||||||||| ||| |||||||| |  |||||||| |||||| || ||||||| ||| ||    
T  13498266 tattgcaatgactaaaaatcagtgtacaaagtaaacatagatactcaaaactagcaaaatacaca--attaaagacaccatcatatttaataattaatga 13498363  T
Q  194 acctagagtacaaagcaataa 214  Q
    ||||| | || ||||||||||    
T  13498364 acctaaattataaagcaataa 13498384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 5033223 - 5033171
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  5033223 cacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactct 5033171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 31159916 - 31159972
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacc 57  Q
    ||||||||||||||||||||||||||||  |||||||| |||||||||||| |||||    
T  31159916 tctctctctttcacaagcattgtgacattatgattggcgaatgtcaccaatatcacc 31159972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 5667158 - 5667107
Alignment:
Q  13 acaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||| ||||||| |||||||||||||||||| ||||||||    
T  5667158 acaagcattgtgacattgtgattgaccaatgtcaccaatgtcatccaactct 5667107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 13499549 - 13499661
Alignment:
Q  72 tagcagatagcgggatagccgctattgcaatgactaaaaaccggtgtaccgggtaaacataaatactcaaaaatagaaaaatacataacattaaagagac 171  Q
    |||| |||||| ||| |||||| |||||| |||||||||| | ||||||   ||||||||||||||||  || |||||||||||| || |||||||| ||    
T  13499549 tagcggatagcaggagagccgcaattgcagtgactaaaaatcagtgtactaagtaaacataaatactc--aactagaaaaatacacaaaattaaagacac 13499646  T
Q  172 catcctacttaataa 186  Q
    |||| ||| ||||||    
T  13499647 catcatacctaataa 13499661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39851020 - 39851081
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaact 62  Q
    ||||||||||||||||||||| | | || |||||||| |||||||||||||||||| |||||    
T  39851020 tctctctctttcacaagcattataatattgtgattggtcaatgtcaccaatgtcactcaact 39851081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 2581887 - 2581839
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaa 60  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||||||||    
T  2581887 cacaagcattgtggcattgtgattggccaatgtcaacaatgtcacccaa 2581839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 8243464 - 8243516
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||    
T  8243464 cacaagcattgtggcattgtgattgaccaacgtcaccaatgtcacccaactct 8243516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8796487 - 8796543
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacc 57  Q
    ||||| ||||||||||||||||||||||  ||||||| ||||||||||||| |||||    
T  8796487 tctctatctttcacaagcattgtgacattttgattggtcaatgtcaccaatatcacc 8796543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 22649907 - 22649855
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| |||||| |||||||||||||||||||| |||||||    
T  22649907 cacaagcattgtggcattgtgattagccaatgtcaccaatgtcactcaactct 22649855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 33841667 - 33841719
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| |||  ||||||| ||||||||||||||||||||||||||    
T  33841667 cacaagcattgtggcattctgattggtcaatgtcaccaatgtcacccaactct 33841719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 34229706 - 34229753
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    ||||||||||||||||||||||||| || ||||||| |||||||||||    
T  34229706 tctctctctttcacaagcattgtgatattgtgattgaccaatgtcacc 34229753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34541876 - 34541829
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  34541876 tctctctctttcacaagcattgtgatattatgattggccaatgtcacc 34541829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37618800 - 37618750
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaat 51  Q
    ||||||||| | ||||| |||||||||| ||||||||||||||||||||||    
T  37618800 tctctctctcttacaaggattgtgacattgtgattggccaatgtcaccaat 37618750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 42822236 - 42822107
Alignment:
Q  78 atagcgggatagccgctattgcaatgactaaaaaccggtgtaccgggtaaacataaatactcaaaaatagaaaaatacataacattaaagagaccatcct 177  Q
    |||| |||||||| |||||||| ||||||| ||| | ||||||   ||||  ||||||| |||||||||||||||||||  | ||||  ||||   || |    
T  42822236 atagtgggatagctgctattgccatgactacaaatcagtgtacaaagtaagtataaatattcaaaaatagaaaaatacaataaattattgagattgtcat 42822137  T
Q  178 acttaataactaaagaacctagagtacaaa 207  Q
    ||||||||| ||||||| ||| ||||||||    
T  42822136 acttaataattaaagaatctaaagtacaaa 42822107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35031687 - 35031639
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacca 49  Q
    |||||||||||||||||||||| ||||| |||||||  |||||||||||    
T  35031687 tctctctctttcacaagcattgcgacattgtgattgatcaatgtcacca 35031639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 43844545 - 43844597
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||| |||||||  |||| |||||||||||| ||||||||    
T  43844545 cacaagcattgtgacattgtgattgatcaatatcaccaatgtcatccaactct 43844597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 6296670 - 6296733
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||| ||||||||||  | |||| | |||||||| ||||||| ||||||||    
T  6296670 tctctctctttcacaagtattgtgacattataattgactaatgtcactaatgtcatccaactct 6296733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 24243856 - 24243809
Alignment:
Q  72 tagcagatagcgggatagccgctattgcaatgactaaaaaccggtgta 119  Q
    |||||||||| |||||| |||| ||||||||||| |||||||||||||    
T  24243856 tagcagatagagggataaccgccattgcaatgacaaaaaaccggtgta 24243809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 45191200 - 45191137
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| |||||||||| ||| ||||||   ||||||||||||| ||| ||||||||    
T  45191200 tctctctctttcataagcattgtggcattgtgattaatcaatgtcaccaatatcatccaactct 45191137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8243461 - 8243415
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcac 47  Q
    |||||||||||||||||||||||| ||| |||||||  |||||||||    
T  8243461 tctctctctttcacaagcattgtggcattgtgattgatcaatgtcac 8243415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 104981 - 104904
Alignment:
Q  73 agcagatagcgggatagccgctattgcaatgactaaaaaccggtgtaccgggtaaacataaatactcaaaaatagaaa 150  Q
    ||||||||| |||||||| ||| |||||| |||| |||| | ||||||    | ||||||||||||||||||||||||    
T  104981 agcagatagtgggatagctgctgttgcaaagactgaaaatcagtgtacaacattaacataaatactcaaaaatagaaa 104904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 8796484 - 8796432
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||| ||||||| ||||| |||| ||| ||||| ||||||    
T  8796484 cacaagcattgtgacattgtgattgaccaatatcacaaatatcacctaactct 8796432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 10086819 - 10086771
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaa 60  Q
    ||||| |||| |||||| ||||||| |||||||||| ||||||||||||    
T  10086819 cacaaacattatgacattgtgattgaccaatgtcactaatgtcacccaa 10086771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 16623001 - 16623049
Alignment:
Q  141 aaaatagaaaaatacataacattaaagagaccatcctacttaataacta 189  Q
    |||||||||||||||| || ||||||||||  ||| |||||||||||||    
T  16623001 aaaatagaaaaatacacaaaattaaagagatgatcatacttaataacta 16623049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 21154248 - 21154208
Alignment:
Q  128 acataaatactcaaaaatagaaaaatacataacattaaaga 168  Q
    |||||||||||||||||||| ||||||||| | ||||||||    
T  21154248 acataaatactcaaaaatagcaaaatacatgaaattaaaga 21154208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 34229703 - 34229651
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||| |||||| ||||||| |  ||||||| ||||||||||||||||    
T  34229703 cacaagcattctgacattgtgattgactcatgtcactaatgtcacccaactct 34229651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12343165 - 12343228
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  12343165 tctctctctttcacaagcattgtgacattgtgattggccaatgtcaccaatctcacccaactct 12343228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 17750969 - 17751030
Alignment:
Q  3 tctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||    
T  17750969 tctctctttcacaagcattgtgacattgtgatcggccaatgtcatcaatatcacccaactct 17751030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 13043522 - 13043585
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||||||| |||| |||||||    
T  13043522 tctctctctttcacaagcattgtgatattgtgattagccaatgtcaccaatatcactcaactct 13043585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 24618674 - 24618611
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||||||| |||||| |||||||  ||||||||||||||||||||||||||    
T  24618674 tctctctctttcataagcattatgacattgtgattgatcaatgtcaccaatgtcacccaactct 24618611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10521922 - 10521873
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaa 50  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  10521922 tctctctctttcataagcattgtgacattgtgattggccaatgtcaccaa 10521873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 24587523 - 24587471
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  24587523 cacaagcattgtgacattgtgattgaccaatgtcactaatgtcacccaactct 24587471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 15111730 - 15111832
Alignment:
Q  72 tagcagatagcgggatagccgctattgcaatgactaaaaaccggtgtaccgggtaaacataaatactcaaaaatagaaaaatacataacattaaagagac 171  Q
    |||| |||||||||| ||||| |||||||| |||| |||| | ||| ||   ||||| ||||||||||||||||||||||||||| || ||| |||||||    
T  15111730 tagcggatagcgggagagccgttattgcaaagacttaaaatcagtg-acaaagtaaaaataaatactcaaaaatagaaaaatacacaaaattgaagagac 15111828  T
Q  172 catc 175  Q
    ||||    
T  15111829 catc 15111832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 24975815 - 24975762
Alignment:
Q  11 tcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||| ||| ||||||| |||||||||||||||||| ||||||||    
T  24975815 tcacaagcattgtggcattgtgattgaccaatgtcaccaatgtcagccaactct 24975762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 551241 - 551289
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaa 60  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||| ||||    
T  551241 cacaagcattgtggcattgtgattggccaatgtcaccaatatcatccaa 551289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 31654367 - 31654331
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    ||||||||||||||||| |||||||||||||||||||    
T  31654367 cacaagcattgtgacattgtgattggccaatgtcacc 31654331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 551238 - 551191
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||| ||||||| ||| ||||||| |||||||||||    
T  551238 tctctctctttcacaaacattgtggcattgtgattgaccaatgtcacc 551191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 17750963 - 17750921
Alignment:
Q  13 acaagcattgtgacatagtgattggccaatgtcaccaatgtca 55  Q
    |||| ||||||||||| ||||||| ||||||||||||||||||    
T  17750963 acaaacattgtgacattgtgattgaccaatgtcaccaatgtca 17750921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 2315374 - 2315330
Alignment:
Q  4 ctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    ||||||||||||| ||||||||||| |||||||  ||||||||||    
T  2315374 ctctctttcacaaacattgtgacattgtgattgatcaatgtcacc 2315330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 23444342 - 23444279
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  23444342 tctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactct 23444279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 47661907 - 47661970
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  47661907 tctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactct 47661970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 6271767 - 6271830
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||    
T  6271767 tctctctctttcacaagcattgtgacattgtgattggccaatgtcaccaatatcactcaactct 6271830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42375075 - 42375138
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||    
T  42375075 tctctctctttcacaagcattgtgacattgtgattgatcaatgtcaccaatgtcacccaactct 42375138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 51265510 - 51265573
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  51265510 tctctctctttcacaagcattgtgacattatgattggtcaatgtcaccaatgtcacccaactct 51265573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 53954675 - 53954738
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||    
T  53954675 tctcactctttcacaagcattgtgacattgtaattggacaatgtcaccaatgtcacccaactct 53954738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 3862622 - 3862674
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  3862622 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactct 3862674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 3871379 - 3871431
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  3871379 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactct 3871431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 23444345 - 23444397
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  23444345 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactct 23444397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 51265507 - 51265455
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  51265507 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactct 51265455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25818446 - 25818387
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaa 60  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||    
T  25818446 tctctctctttcacaatcattgtgacattgtgattgaccaatgtcatcaatgtcacccaa 25818387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 35682231 - 35682294
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||| ||||||    
T  35682231 tctctatctttcacaagcattgtgacattgtgatcggtcaatgtcaccaatgtcacctaactct 35682294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 50384178 - 50384131
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  50384178 tctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 50384131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 52028614 - 52028661
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  52028614 tctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 52028661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 40789244 - 40789293
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaa 50  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  40789244 tctctctctttcacaagcattgtgacattgtgattggccaatatcaccaa 40789293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 6271764 - 6271712
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  6271764 cacaagcattgtggcattgtgattggccaatgtcaccaatatcacccaactct 6271712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 47661904 - 47661856
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaa 60  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  47661904 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 47661856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24006143 - 24006096
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  24006143 tctctctctttcacaagcattgtgtcattgtgattggccaatgtcacc 24006096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 47404658 - 47404611
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||    
T  47404658 tctctctctttcacaagcattgtgacattgtgattgaccaatgtcacc 47404611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 55090069 - 55090023
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcac 47  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||    
T  55090069 tctctctctttcacaagcattgtgacattgtgattgaccaatgtcac 55090023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 26186087 - 26186042
Alignment:
Q  3 tctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||    
T  26186087 tctctctttcacaagcattgtgacattgtgattgaccaatgtcacc 26186042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 47762673 - 47762734
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaact 62  Q
    ||||||||||||||||||||||||||||  || ||| |||||||||||||| ||| ||||||    
T  47762673 tctctctctttcacaagcattgtgacattatggttgaccaatgtcaccaatatcatccaact 47762734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 26186090 - 26186142
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||| || ||||||||||||||||| |||||| ||||||||||    
T  26186090 cacaagcattgtgaaattgtgattggccaatgtcatcaatgttacccaactct 26186142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 30861850 - 30861902
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||| ||||||||    
T  30861850 cacaagcattgtggcattgtgattggccaatgtcaccaatatcatccaactct 30861902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 31430534 - 31430487
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  31430534 tctctctctttcataagcattgtgacattgtgattggtcaatgtcacc 31430487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 30709986 - 30710028
Alignment:
Q  22 gtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||| |||||||||||||||||||||||||||| ||||||    
T  30709986 gtgacattgtgattggccaatgtcaccaatgtcacctaactct 30710028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 35682228 - 35682176
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||| ||| |||||| |||||||||||||||||||||| ||||| ||||||    
T  35682228 cacaagtattatgacattgtgattggccaatgtcaccaatatcacctaactct 35682176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 40789241 - 40789203
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaa 50  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  40789241 cacaaacattgtgacattgtgattggccaatgtcaccaa 40789203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 44379990 - 44379940
Alignment:
Q  14 caagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||  | ||||||||||||| |||||||||| |||||||    
T  44379990 caagcattgtgacattataattggccaatgtcgccaatgtcactcaactct 44379940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28693996 - 28693951
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtca 46  Q
    |||||||||||||||| |||||||| || |||||||| ||||||||    
T  28693996 tctctctctttcacaaacattgtgatattgtgattggtcaatgtca 28693951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 5048884 - 5048928
Alignment:
Q  20 ttgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||  |||||| ||||||||| |||||||||||||||||    
T  5048884 ttgtgacattatgattgaccaatgtcatcaatgtcacccaactct 5048928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 38714894 - 38714946
Alignment:
Q  7 tctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcaccca 59  Q
    |||||||||| ||||||||||| | ||||||  ||| ||||||||||||||||    
T  38714894 tctttcacaaacattgtgacattgagattgggtaatatcaccaatgtcaccca 38714946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 53954668 - 53954636
Alignment:
Q  16 agcattgtgacatagtgattggccaatgtcacc 48  Q
    ||||||||||||| |||||||||||||||||||    
T  53954668 agcattgtgacattgtgattggccaatgtcacc 53954636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 1801519 - 1801456
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  1801519 tctctctctttcacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactct 1801456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 47492120 - 47492061
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaa 60  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47492120 tctctctttttcacaagcattgtgacattgtgattggccaatgtcaccaatgtcacccaa 47492061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 41753033 - 41753092
Alignment:
Q  5 tctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||    
T  41753033 tctctttcacaagcattgtggcattgtgattggccaatgtcaccaatgtcactcaactct 41753092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 45103180 - 45103119
Alignment:
Q  3 tctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||| |||||||  |||| |||||||||||||||||||||    
T  45103180 tctctctttcacaagcattgtgacattgtgattgatcaatatcaccaatgtcacccaactct 45103119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30476547 - 30476500
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  30476547 tctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 30476500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 33689241 - 33689288
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  33689241 tctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 33689288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 41753026 - 41752974
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||    
T  41753026 cacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactct 41752974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 43139785 - 43139837
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||||||||||    
T  43139785 cacaagcattgtggcattgttattggccaatgtcaccaatgtcacccaactct 43139837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 47492123 - 47492175
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||| ||||||||||||| | |||||||||||||||||||    
T  47492123 cacaagcattgtgacattgtgattggccaatatgaccaatgtcacccaactct 47492175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 29378772 - 29378713
Alignment:
Q  126 aaacataaatactcaaaaatagaaaaatacataacattaaagagaccatcctacttaata 185  Q
    |||||||||||||||||| |||||||||||| || | ||||||||||||| |||||||||    
T  29378772 aaacataaatactcaaaactagaaaaatacacaaaactaaagagaccatcatacttaata 29378713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 30734475 - 30734412
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||| |||||||||||||||||||||| ||||| || |||||||| |||||||||| ||||||    
T  30734475 tctctatctttcacaagcattgtgacattgtgatcggtcaatgtcatcaatgtcaccaaactct 30734412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 47677328 - 47677279
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaa 50  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||||||    
T  47677328 tctctctctttcacaagcattgtgacattgtgatcggtcaatgtcaccaa 47677279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 30734478 - 30734530
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||| ||| |||||| |||||||||||||||||||||||||||| ||||||    
T  30734478 cacaagtattatgacattgtgattggccaatgtcaccaatgtcacctaactct 30734530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 33689238 - 33689186
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||| ||||||| ||||| ||| |||||||||||||||||    
T  33689238 cacaagcattgtgacattgtgattgaccaatatcatcaatgtcacccaactct 33689186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 51046149 - 51046201
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||| || ||| |||||||||||||||||||||||||| ||||||||    
T  51046149 cacaagcattatggcattgtgattggccaatgtcaccaatgtcatccaactct 51046201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 29031787 - 29031740
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  29031787 tctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 29031740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 50524767 - 50524830
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||| || |||| ||||||| | ||| ||||||||||||| |||||||    
T  50524767 tctctctctttcacaagcatcgtaacattgtgattgactaatatcaccaatgtcactcaactct 50524830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 51046146 - 51046083
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||| |||||||||||  ||||||  ||||||||||||| ||| ||||||||    
T  51046146 tctctctctttcacaaacattgtgacattatgattgatcaatgtcaccaatatcatccaactct 51046083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 18321705 - 18321661
Alignment:
Q  20 ttgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||| ||||||| |||||||||||||| ||||||||||||    
T  18321705 ttgtgacattgtgattgaccaatgtcaccaatatcacccaactct 18321661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 21024165 - 21024117
Alignment:
Q  3 tctctctttcacaagcattgtgacatagtgattggccaatgtcaccaat 51  Q
    ||||||||||||||| |||||||||| ||| ||| ||||||||||||||    
T  21024165 tctctctttcacaagaattgtgacattgtgtttgaccaatgtcaccaat 21024117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 30580832 - 30580880
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaa 60  Q
    |||||||| |||||||| ||||||| |||||||||| ||||||||||||    
T  30580832 cacaagcactgtgacattgtgattgaccaatgtcacaaatgtcacccaa 30580880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 30580825 - 30580770
Alignment:
Q  5 tctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaa 60  Q
    ||||||||||||  ||||||||||  ||||||| |||| |||||||||||||||||    
T  30580825 tctctttcacaaatattgtgacattatgattggtcaatatcaccaatgtcacccaa 30580770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43139782 - 43139735
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    ||||||||||||||||||||| |||||| ||||||| || ||||||||    
T  43139782 tctctctctttcacaagcattctgacattgtgattgaccgatgtcacc 43139735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 45755128 - 45755178
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaat 51  Q
    ||||||||||||||||| |||||||| | | ||||||||||||| ||||||    
T  45755128 tctctctctttcacaaggattgtgacgttgcgattggccaatgttaccaat 45755178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 55223297 - 55223343
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcac 47  Q
    ||||||||||||||||||||||||||||  |||||| ||||| ||||    
T  55223297 tctctctctttcacaagcattgtgacattatgattgaccaatatcac 55223343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 44864549 - 44864605
Alignment:
Q  128 acataaatactcaaaaatagaaaaatacataacattaaagagaccatcctacttaat 184  Q
    ||||||||||||||||||||||| ||||| || ||||||| |||  || ||||||||    
T  44864549 acataaatactcaaaaatagaaatatacacaaaattaaagggacagtcatacttaat 44864605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 32540821 - 32540758
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  32540821 tctctctctttcacaagcattgtgacattgtgattggccaatgccaccaatgtcacccaactct 32540758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 48993990 - 48993927
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  48993990 tctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactct 48993927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15220876 - 15220939
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||    
T  15220876 tctctctctttcacaagcattgtgagattgtgattggccaatatcaccaatgtcacccaactct 15220939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29179670 - 29179607
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||    
T  29179670 tctctctctttcacaagcattgtgacattgtgattggtcagtgtcaccaatgtcacccaactct 29179607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5995434 - 5995497
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| ||||||||    
T  5995434 tctctctctttcacaagcattgtggcattgtgattggtcaatgtcaccaatgtcatccaactct 5995497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17127637 - 17127574
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||||    
T  17127637 tctctctctttcacaagcattgtgacattgtgattggtcaatgtcactaatgtcacctaactct 17127574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 29179673 - 29179725
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  29179673 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactct 29179725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 29371433 - 29371489
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacc 57  Q
    |||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||    
T  29371433 tctctctctttcacaagcattgtgacattgtgattggtcaatatcaccaatgtcacc 29371489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 37155108 - 37155056
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  37155108 cacaagcattgtgacattgtgattggccaatgtcaccaatgtcaccaaactct 37155056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 21630104 - 21630054
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaact 62  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  21630104 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaact 21630054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 28928852 - 28928803
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaa 50  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  28928852 tctctctctttcacaagcactgtgacattgtgattggccaatgtcaccaa 28928803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 33219640 - 33219701
Alignment:
Q  3 tctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||||| |||||| |||||||  ||||||||||||||||| ||||||||    
T  33219640 tctctctttcacaagcattatgacattgtgattgatcaatgtcaccaatgtcatccaactct 33219701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 9157372 - 9157320
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||| |||||||| |||||| |||||||||||||||||||    
T  9157372 cacaagcattgtgacattgtgattggtcaatgttaccaatgtcacccaactct 9157320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 28395699 - 28395647
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||| |||||||| |||||||||||||||||| |||||||    
T  28395699 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcactcaactct 28395647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 44706860 - 44706912
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||| | ||| |||||||||||||||||||||||||||||||||||    
T  44706860 cacaagcattgcggcattgtgattggccaatgtcaccaatgtcacccaactct 44706912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 46932059 - 46932007
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||    
T  46932059 cacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactct 46932007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 48993993 - 48994045
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  48993993 cacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactct 48994045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 741575 - 741528
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  741575 tctctctctttcacaagcattgtgacattgtgattgggcaatgtcacc 741528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4609061 - 4609108
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||    
T  4609061 tctctctctttcacaagcattgtgacattgtgattgaccaatgtcacc 4609108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 37155111 - 37155158
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  37155111 tctctctctttcacaagtattgtgacattgtgattggccaatgtcacc 37155158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 46334017 - 46333974
Alignment:
Q  3 tctctctttcacaagcattgtgacatagtgattggccaatgtca 46  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  46334017 tctctctttcacaagcattgtgacattgtgattggccaatgtca 46333974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 8337924 - 8337875
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaa 50  Q
    |||||||||||||||| ||||||||||| ||||||| |||||||||||||    
T  8337924 tctctctctttcacaaacattgtgacattgtgattgaccaatgtcaccaa 8337875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 38674576 - 38674531
Alignment:
Q  3 tctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||    
T  38674576 tctctctttcacaagcattgtgacattgtgattggccaatatcacc 38674531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 49444984 - 49444923
Alignment:
Q  3 tctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||| ||||||||||||| |||| |||||||  | ||||||||||||||||||||||||    
T  49444984 tctctctctcacaagcattgtaacattgtgattgatcgatgtcaccaatgtcacccaactct 49444923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1819562 - 1819515
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||||||||| |||||||  ||||||||||    
T  1819562 tctctctctttcacaagcattgtgacattgtgattgatcaatgtcacc 1819515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 34062274 - 34062321
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||    
T  34062274 tctctctctttcacaaacattgtgacattgtgattggtcaatgtcacc 34062321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47303460 - 47303507
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||| ||||||||||| ||||||| |||||||||||    
T  47303460 tctctctctttcacaaacattgtgacattgtgattgaccaatgtcacc 47303507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 28369892 - 28369946
Alignment:
Q  130 ataaatactcaaaaatagaaaaatacataacattaaagagaccatcctacttaat 184  Q
    |||||||||||||||||||||||||||| | ||||||| ||| ||| ||||||||    
T  28369892 ataaatactcaaaaatagaaaaatacatgatattaaagggacaatcgtacttaat 28369946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 36290490 - 36290535
Alignment:
Q  19 attgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||| |||||||| ||||| ||||||||||||||||||||    
T  36290490 attgtgacattgtgattggtcaatgccaccaatgtcacccaactct 36290535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 48498480 - 48498529
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaa 50  Q
    |||||||||||||||||||| || |||| |||||||| ||||||||||||    
T  48498480 tctctctctttcacaagcatggtaacattgtgattggtcaatgtcaccaa 48498529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 1091620 - 1091672
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||| ||||||||||| |||||||| ||| ||||||||| ||||||||||||    
T  1091620 cacaaacattgtgacattgtgattggtcaaagtcaccaatatcacccaactct 1091672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 5995431 - 5995379
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||| | ||||||    
T  5995431 cacaagcattgtggcattgtgattggccaatgttaccaatgtcatcaaactct 5995379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 17127640 - 17127692
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||  ||||||| ||||||||| ||||||||| ||||||    
T  17127640 cacaagcattgtgacattttgattggtcaatgtcactaatgtcacctaactct 17127692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 32540824 - 32540872
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaa 60  Q
    |||||||||||| |||| |||||||| ||||||||||||||||| ||||    
T  32540824 cacaagcattgtaacattgtgattggtcaatgtcaccaatgtcatccaa 32540872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44706857 - 44706809
Alignment:
Q  1 tctctctctttcacaagcattgtgaca-tagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||||| || | |||||||||||||||||||    
T  44706857 tctctctctttcacaagcattgtggcatttgtgattggccaatgtcacc 44706809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 45728349 - 45728297
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||| || |||||||| |||| |||||||| ||||||||||||    
T  45728349 cacaagcattgtgatattgtgattggtcaatatcaccaatatcacccaactct 45728297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45728352 - 45728396
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtc 45  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||    
T  45728352 tctctctctttcacaagcattatgacattgtgattgaccaatgtc 45728396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 1091617 - 1091582
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattg 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  1091617 tctctctctttcacaagcattgtgacattgtgattg 1091582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 4609058 - 4609007
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactc 63  Q
    ||||| ||||||||||| ||||| || |||||||||| ||||||||||||||    
T  4609058 cacaaacattgtgacattgtgatgggtcaatgtcaccgatgtcacccaactc 4609007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 48605020 - 48604973
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    ||||||||||||||||  |||||||||| ||||||| |||||||||||    
T  48605020 tctctctctttcacaaatattgtgacattgtgattgaccaatgtcacc 48604973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 48823945 - 48823911
Alignment:
Q  14 caagcattgtgacatagtgattggccaatgtcacc 48  Q
    ||||||||||||||| |||||||||||||||||||    
T  48823945 caagcattgtgacattgtgattggccaatgtcacc 48823911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 12441023 - 12441076
Alignment:
Q  4 ctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacc 57  Q
    |||||||| ||||| ||| |||||| |||||| ||||||| |||||||||||||    
T  12441023 ctctcttttacaaggattatgacattgtgattagccaatgccaccaatgtcacc 12441076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 19711251 - 19711206
Alignment:
Q  3 tctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    ||||||||||||| ||||||| |||| |||||||| ||||||||||    
T  19711251 tctctctttcacatgcattgtaacattgtgattggtcaatgtcacc 19711206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 29371430 - 29371394
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  29371430 cacaaacattgtgacattgtgattggccaatgtcacc 29371394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 33734241 - 33734213
Alignment:
Q  34 ttggccaatgtcaccaatgtcacccaact 62  Q
    |||||||||||||||||||||||||||||    
T  33734241 ttggccaatgtcaccaatgtcacccaact 33734213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 49444987 - 49445023
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  49444987 cacaagcattgtggcattgtgattggccaatgtcacc 49445023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4290610 - 4290671
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaact 62  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  4290610 tctctctctttcacaagaattgtgacattgtgattggccaatgtcaccaatgtcacccaact 4290671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 11016934 - 11016997
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  11016934 tctctctctttcacaaacattgtgacattgtgattggtcaatgtcaccaatgtcacccaactct 11016997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42628360 - 42628423
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  42628360 tctctctctttcacaagcattgggacattgtgattggccaatatcaccaatgtcacccaactct 42628423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15027607 - 15027661
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtca 55  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  15027607 tctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtca 15027661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 48000767 - 48000705
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactc 63  Q
    |||||||||||||||||||||||| ||| |||||||  |||||||||||||||||||||||||    
T  48000767 tctctctctttcacaagcattgtggcattgtgattgatcaatgtcaccaatgtcacccaactc 48000705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 11016931 - 11016879
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  11016931 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactct 11016879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 48000802 - 48000865
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||  ||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  48000802 tctctctctttcacagacattgtggcattgtgattggtcaatgtcaccaatgtcacccaactct 48000865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 45231929 - 45231978
Alignment:
Q  15 aagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  45231929 aagcattgtaacattgtgattggccaatgtcaccaatgtcacccaactct 45231978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 41018301 - 41018254
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||    
T  41018301 tctctctctttcacaagcattgggacattgtgattggccaatgtcacc 41018254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 27028790 - 27028740
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaact 62  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||| |||||    
T  27028790 cacaagcattgtgacattgtgattgtccaatgtcaccaatgtcactcaact 27028740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 32195182 - 32195059
Alignment:
Q  72 tagcagatagcgggatagccgctattgcaatgactaaaaaccggtgtaccgggtaaacataaatactcaaaaatagaaaaatacataacattaaagagac 171  Q
    |||| ||||| ||||||||||||||| ||| ||||||||| |  | ||    || |||||||||||||||||||||| ||||||| |  ||||||||||     
T  32195182 tagcggatagtgggatagccgctatttcaaagactaaaaatcattttaagaagttaacataaatactcaaaaatagacaaatacaca--attaaagagaa 32195085  T
Q  172 catcctacttaataactaaagaacct 197  Q
    |||| |||||| ||| ||||||||||    
T  32195084 catcatacttattaattaaagaacct 32195059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4649387 - 4649436
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaa 50  Q
    |||||||||||||||||||| ||||||| ||||||| |||||||||||||    
T  4649387 tctctctctttcacaagcatcgtgacattgtgattgaccaatgtcaccaa 4649436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29053387 - 29053338
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaa 50  Q
    |||||||||||||||||||||| | ||| |||||||||||||||||||||    
T  29053387 tctctctctttcacaagcattgaggcattgtgattggccaatgtcaccaa 29053338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 34854764 - 34854719
Alignment:
Q  5 tctctttcacaagcattgtgacatagtgattggccaatgtcaccaa 50  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||    
T  34854764 tctctttcacaagcattgtggcattgtgattggccaatgtcaccaa 34854719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 41018307 - 41018356
Alignment:
Q  15 aagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  41018307 aagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactct 41018356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 34854771 - 34854823
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||| ||||||| ||| ||||||| |||||||||||||||||||||||||||    
T  34854771 cacaaacattgtggcattgtgattgaccaatgtcaccaatgtcacccaactct 34854823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 38975867 - 38975815
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||| ||| ||||||| ||||||| |||||||||||||||||||    
T  38975867 cacaagcattgtggcattgtgattgaccaatgttaccaatgtcacccaactct 38975815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 7671984 - 7671937
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||||| ||| ||||||||| |||||||||    
T  7671984 tctctctctttcacaagcattgtggcattgtgattggctaatgtcacc 7671937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 38975870 - 38975933
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||| |||  | ||||  ||||||||||||||||||| ||||||    
T  38975870 tctctctctttcacaagcattgtggcattataattgatcaatgtcaccaatgtcacctaactct 38975933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 41945924 - 41945981
Alignment:
Q  5 tctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaact 62  Q
    ||||||||||||||||||| |||| ||||||| ||||| | ||||||||||| |||||    
T  41945924 tctctttcacaagcattgtaacattgtgattgaccaatattaccaatgtcactcaact 41945981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 22764776 - 22764820
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcac 56  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||||    
T  22764776 cacaaacattgtgacattgtgattggccaatatcaccaatgtcac 22764820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 27028866 - 27028823
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgt 44  Q
    ||||||||||||| |||||||||||||| ||||||| |||||||    
T  27028866 tctctctctttcagaagcattgtgacattgtgattgtccaatgt 27028823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10419523 - 10419572
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaa 50  Q
    |||||||||||||||||  ||||||||| |||||  ||||||||||||||    
T  10419523 tctctctctttcacaagttttgtgacattgtgatcagccaatgtcaccaa 10419572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 4290603 - 4290555
Alignment:
Q  16 agcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||| ||| ||||||| ||||| |||||||| ||||||||||||    
T  4290603 agcattgtggcattgtgattgaccaatatcaccaatatcacccaactct 4290555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 27028869 - 27028917
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaa 60  Q
    ||||| ||||||||||| ||||||| |||||||||||||  ||||||||    
T  27028869 cacaaacattgtgacattgtgattgaccaatgtcaccaacatcacccaa 27028917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 7120 - 7057
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  7120 tctctctctttcacaagcattgtgacattgtgattggctaatatcaccaatgtcacccaactct 7057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 7123 - 7168
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcaccaatgtcacc 57  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  7123 cacaagcattgtgacattgtgattggccaatgtcaccaatgtcacc 7168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 49776 - 49713
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||| |||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||    
T  49776 tctctttctttcacaagcattgtgacattgtgattggtcaatgtcatcaatgtcacccaactct 49713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 49779 - 49815
Alignment:
Q  12 cacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  49779 cacaagcattgtggcattgtgattggccaatgtcacc 49815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 27293 - 27230
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||||||||||||||| ||| |||||| ||||||||||||| |||| ||||||||||||||||    
T  27293 tctctctctttcacaagaattatgacattgtgattggccaatatcactaatgtcacccaactct 27230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 27299 - 27348
Alignment:
Q  15 aagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    |||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  27299 aagcattgtggcattgtgattggccaatatcaccaatgtcacccaactct 27348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 63822 - 63869
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  63822 tctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 63869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 86447 - 86357
Alignment:
Q  124 gtaaacataaatactcaaaaatagaaaaatacataacattaaagagaccatcctacttaataactaaagaacctagagtacaaagcaataa 214  Q
    ||||||||||||||| || |||| ||||||||| || |||||||||||  || |||||||||| | ||||||||| |||||| ||||||||    
T  86447 gtaaacataaatactaaagaataaaaaaatacacaaaattaaagagactgtcatacttaataattgaagaacctaaagtacagagcaataa 86357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 19195 - 19132
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacccaactct 64  Q
    ||||| |||| ||||||||||||||||| |||||||  |||| ||| |||||||||||||||||    
T  19195 tctctttcttccacaagcattgtgacattgtgattgatcaatatcatcaatgtcacccaactct 19132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 4963 - 4909
Alignment:
Q  3 tctctctttcacaagcattgtgacatagtgattggccaatgtcaccaatgtcacc 57  Q
    ||||||||||||||||||||| | || |||||||| | |||||||||||||||||    
T  4963 tctctctttcacaagcattgtaatattgtgattggtcgatgtcaccaatgtcacc 4909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2278 - 2322
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtc 45  Q
    |||||||||||||||||||||||||||| |||||||  |||||||    
T  2278 tctctctctttcacaagcattgtgacattgtgattgatcaatgtc 2322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2278 - 2322
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtc 45  Q
    |||||||||||||||||||||||||||| |||||||  |||||||    
T  2278 tctctctctttcacaagcattgtgacattgtgattgatcaatgtc 2322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 2960 - 2913
Alignment:
Q  1 tctctctctttcacaagcattgtgacatagtgattggccaatgtcacc 48  Q
    |||||||||||||||| ||||||||||| |||||||| |||| |||||    
T  2960 tctctctctttcacaaacattgtgacattgtgattggtcaatatcacc 2913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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