View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16922_low_2 (Length: 462)
Name: NF16922_low_2
Description: NF16922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16922_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 41795794 - 41795516
Alignment:
| Q |
17 |
agttggttggtaaaaaatagttagagcaatgcaatcaattacttattaaaaaagaaatttggcatgtaaacttgctctttgttaatatggggaaatcttt |
116 |
Q |
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| T |
41795794 |
agttggttggtaaaaaatagttagagcaatgcaatcaattacttattaaaaaagaaatttggcatgtaaacttgctctttgttaatatggggaaatcttt |
41795695 |
T |
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| Q |
117 |
gcaaaatttaatggatgcatacatctaaaatagcatgatcaaaagaaagaagatcatggtt--ttgttgcttaaatcaaaccatgattaaatgccgtcta |
214 |
Q |
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| T |
41795694 |
gcaaaatttaatggatgcatacatctaaaatagcatgatcaaaagaaagaagatcatggttgctgtttacttaaatcaaaccatgactaaatgccgtcta |
41795595 |
T |
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| Q |
215 |
gcatcaattctaagatcttctttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcacac |
293 |
Q |
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| T |
41795594 |
gcatcaattcttagatcttctttcatctttctaatgaaatcttcgaattttttgtttaactcttctgtacttaacacac |
41795516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 65 - 295
Target Start/End: Complemental strand, 41760968 - 41760725
Alignment:
| Q |
65 |
aaaaagaaatttggcatgtaaacttgctctttgttaatatggggaaatctttgcaaaatttaatggatgcatacatctaa-------aata------gca |
151 |
Q |
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| T |
41760968 |
aaaaagaaatttggcatggaaacttgctctttgttaatatctg-aaatctttgcaaaatttaatggatgcatacatctaatttctaaaatacaagaagca |
41760870 |
T |
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| Q |
152 |
tgatcaaaagaaagaagatcatgg-ttttgttgcttaaatcaaaccatgattaaatgccgtctagcatcaattctaagatcttctttcatctttctaatg |
250 |
Q |
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| T |
41760869 |
tgatcaaaagaaagaagatcatgggttttgttgcttaaatcaaaccatgattaaatgccgtctagcatcaattctaagatcttctttcatctttctaatg |
41760770 |
T |
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| Q |
251 |
aaatcttcaaattttttgtttaactcttcagtacttagcacacaa |
295 |
Q |
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| T |
41760769 |
aaatcttcaaattttttgtttaactcttctgtacttagcacacaa |
41760725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 361 - 436
Target Start/End: Complemental strand, 41795457 - 41795382
Alignment:
| Q |
361 |
aattagaatgtaatcaatttccgacaatttatctccatcttcatcatctgcatcaaatagttcaacttcttcttct |
436 |
Q |
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| T |
41795457 |
aattagaatgtaatcaatttccgaccctttatctccgtcttcatcatctgcatcaaatagttcaacttcttcttct |
41795382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 361 - 433
Target Start/End: Complemental strand, 41760656 - 41760584
Alignment:
| Q |
361 |
aattagaatgtaatcaatttccgacaatttatctccatcttcatcatctgcatcaaatagttcaacttcttct |
433 |
Q |
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| T |
41760656 |
aattagaatgtaatcaatttccgacaatttatctccctcatcatcatgtgcatcaaatagttcaacttcttct |
41760584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 23507455 - 23507400
Alignment:
| Q |
236 |
ttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcac |
291 |
Q |
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| T |
23507455 |
ttcatctttttaatgaagtcatcaaattttttgttcaactcctcagtgcttagcac |
23507400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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