View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16922_low_3 (Length: 439)
Name: NF16922_low_3
Description: NF16922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16922_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 434
Target Start/End: Original strand, 11295375 - 11295806
Alignment:
| Q |
20 |
atgaacaccagccatatatgcagtatatttgtcagttgttcaaattaaggaacaataaaaataaacccttctcctagctaacaaacaattacaattaaaa |
119 |
Q |
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| T |
11295375 |
atgaacaccagccatat--gcagtatatttgtcagttgttcaaattaaggaacaataaaaataaacccttctcctagctaacaaacaattacaattaaaa |
11295472 |
T |
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| Q |
120 |
cactgacataaggttgttgtgaaccatgcaattgcaagcatgctacaatgtagtaagcatttctaagactttcacccttcggtgacataagagaattgta |
219 |
Q |
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| T |
11295473 |
cactgacataaggttgttgtgaaccatgcaattgcaagcatgctacaatgtagtaagcatttctaagactttcacccttcagtgacataagagaattgtc |
11295572 |
T |
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| Q |
220 |
aaaggtccataaaaatatttgaattctaaaa-tttttgttaatagtccttgaacatatataactttgtttttggtccttgatgttttgttttagaagtcc |
318 |
Q |
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| T |
11295573 |
aaaggtccataaaaatatttgaattctaaaattttttgtttttagtccttgaacatatataactttgtttttggtccttgatgttttgttttagaagtcc |
11295672 |
T |
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| Q |
319 |
ttgcaaaatttgttc------------------ataatatttattttagacttattctaagagacnnnnnnntcaaatcaaatagtctacacatatacca |
400 |
Q |
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| T |
11295673 |
ttgcaaaatttgttcatattgaaattcgtctctataatatttattttagacttattctaagagacaaaaaaatcaaatcaaatagtctacacatatacca |
11295772 |
T |
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| Q |
401 |
gtatttcctcaagaaatcattaattcatctcact |
434 |
Q |
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| T |
11295773 |
gtatttcctcaagaaatcattaattcatttcact |
11295806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 93
Target Start/End: Complemental strand, 14186671 - 14186637
Alignment:
| Q |
59 |
tcaaattaaggaacaataaaaataaacccttctcc |
93 |
Q |
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| T |
14186671 |
tcaaattaaggaacaataaaaataaacccttctcc |
14186637 |
T |
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