View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16922_low_4 (Length: 432)
Name: NF16922_low_4
Description: NF16922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16922_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 15555846 - 15555414
Alignment:
| Q |
1 |
ttaaaactcttttgaatttgctcttttgcttgatccattgcttcatagatgaatcccatggctggtttttt-atctgagtcagccaaacgaagcactttc |
99 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
15555846 |
ttaaaactcttttgaatttgctcctttgcttgatccattgcttcatagatgaatcccatggctggtttttttatctaagtcagccaaacgaagcactttc |
15555747 |
T |
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| Q |
100 |
atgagaggagtcgcacccttcaagcaaattacaatatccttccaaaactttttatccaaaatcatatcttcaagagctttcccatctcttaacttggcac |
199 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15555746 |
atgagaggagtcgcacccttcaaacaaattacaatatccttccaaaactttttatccaaaataatatcttcaagagctttcccatctcttaacttggcac |
15555647 |
T |
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| Q |
200 |
atttgctggacttccattccttggaagtaaacattcttatcaaagcttccttattctcatacaagcaccctaaagtaagatatgatgtggcaaagcgagt |
299 |
Q |
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| T |
15555646 |
atttgccggacttccattccttggaagtaaacattcttatcaaagcttccttattctcatacaagcaccctaaagtaagatatgatgtggcaaagcgagt |
15555547 |
T |
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| Q |
300 |
agcacctggcctaaccaaatctctgttttttgtgtgactatgcaaaatagaaattagagatgttcttgcataaataaaagttgtaatctttttacccttc |
399 |
Q |
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| T |
15555546 |
agcacctggcctaaccaaatctctgttttttgtgtgactatgcagaatagaaattagagatgttcttgcataaataaaagttgtaatctttttacccttc |
15555447 |
T |
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| Q |
400 |
ggaattgtctctccatgaatcggtattttcttt |
432 |
Q |
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| T |
15555446 |
ggaattgtctctccatgaatcggtattttcttt |
15555414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 8989142 - 8989327
Alignment:
| Q |
1 |
ttaaaactcttttgaatttgctcttttgcttgatccattgcttcatagatgaatcccatggctgg-ttttttatctgagtcagccaaacgaagcactttc |
99 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| ||||| |
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| T |
8989142 |
ttaaaattcttttgaatttgctcctttgcttgatccattgcttcatagatgaatctcatggctggtttttttatctgagtcaaccaaacgaagaactttt |
8989241 |
T |
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| Q |
100 |
atgagaggag----tcgcacccttcaagcaaattacaatatccttccaaaactttttatccaaaatcatatcttcaagagctttcc |
181 |
Q |
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|||||||| | |||||||| |||| || ||||||||||||||||||||| ||||||||| ||||||| || ||||||||||| |
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| T |
8989242 |
atgagaggcgtcgatcgcacccctcaaacatattacaatatccttccaaaacactttatccaagatcatatttttaagagctttcc |
8989327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 4369816 - 4369856
Alignment:
| Q |
206 |
tggacttccattccttggaagtaaacattcttatcaaagct |
246 |
Q |
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| T |
4369816 |
tggacttccattcctcggaagtgaacattcttaccaaagct |
4369856 |
T |
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