View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16922_low_5 (Length: 392)
Name: NF16922_low_5
Description: NF16922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16922_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 35929616 - 35929260
Alignment:
| Q |
19 |
ctgtgatgaagatacagtacaactgcataaacggcaacaataagatagaggacaaaatatatttatcattaagtttaaaagttaatcacaaagtgctaaa |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35929616 |
ctgtgatgaagatacagtacaagtgcataaacggcaacaataagttagaggacaaaatatatttatcattaagtttaaaagttaatcacaaagtgctaaa |
35929517 |
T |
|
| Q |
119 |
ttgttaaataacttgatatgtgtctagaaaaagggaaacaaggacaatccattacattcaaggagaaactatattaaatcagccggctgatcattgcctg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35929516 |
ttgttaaataacttgatatgtgtctagaaaaagggaaacaaggacaatccattacattcaaggagaaactatattaaatcagccggctgatcattgcctg |
35929417 |
T |
|
| Q |
219 |
gtcaatactagtgtcatcgttctcttgtttctttcacatgcctccaaccacaacaaaacaagccctaaaatactttcactgttttgtatctataaataga |
318 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35929416 |
gtcaatactaatgtcatcgttctcttgtttctttcacatgcctccaaccacaacaaaacaagccctaaaatactttcactgttttgtatctataaataga |
35929317 |
T |
|
| Q |
319 |
tagaaactaagatatatggaaaccaagttgagaataagatggagaaggtttctcttt |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35929316 |
tagaaactaagatatatggaaaccaagttgagaataagatgaagaaggtttctcttt |
35929260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 24 - 317
Target Start/End: Complemental strand, 35936261 - 35935966
Alignment:
| Q |
24 |
atgaagatacagtacaactgcataaacggcaacaataagatagaggacaaaatatatttatcattaagtttaaaagttaatcacaaagtgctaaattgtt |
123 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| ||||||| ||| ||||| |||||| ||| ||||||||| |||||||||||||||||| |
|
|
| T |
35936261 |
atgaagatacagtacaactgcatcaaccacaacaataagttagaggaaaaagtatat----cattaactttcaaagttaatgacaaagtgctaaattgtt |
35936166 |
T |
|
| Q |
124 |
aaataacttgatatgtgtctagaaaaagggaaacaaggacaatccattacattcaaggagaaactatatt-aaatcagccggctgatcattgcctg---- |
218 |
Q |
| |
|
|||||||||| |||| |||| ||| |||||||||| ||||||||||| |||||||| |||||||| ||| ||| ||||||||||||| |||| || |
|
|
| T |
35936165 |
aaataacttgttatgattctacaaacagggaaacaaagacaatccattgcattcaagaagaaactaaattaaaaccagccggctgatc-ttgcatggtca |
35936067 |
T |
|
| Q |
219 |
---gtcaatactagtgtcatcgttctcttgtttctttcacatgcctccaaccacaacaaaacaagccctaaaatactttcactgttttgtatctataaat |
315 |
Q |
| |
|
||||||| || ||| ||| ||||||||||||||||||| ||||||| ||||||||||||| | | || | | ||||||||| ||||||||||| |
|
|
| T |
35936066 |
gtagtcaatagtaatgttatcacactcttgtttctttcacatg-ctccaacaacaacaaaacaagtcatgcaaaattgccactgttttttatctataaat |
35935968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 35916641 - 35916550
Alignment:
| Q |
85 |
cattaagtttaaaagttaatcacaaagtgctaaattgttaaataacttgatatgtgtctagaaaaagggaaacaaggacaatccattacatt |
176 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
35916641 |
cattaactttcaaagttaatcacaaagtgctaaaacgttaaataacttgatatgattctagaaaaagggaaacaatgacaatcccttacatt |
35916550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 35922909 - 35922772
Alignment:
| Q |
40 |
actgcataaacggcaacaataagatagaggacaaaatatatttatcattaagtttaaaagttaatcacaaagtgctaaattgttaaataacttgat---a |
136 |
Q |
| |
|
||||||||||| |||||||||| ||||||| |||||||| |||||| ||| ||||||||||||||||| ||||||| ||||||| |||||| | |
|
|
| T |
35922909 |
actgcataaaccacaacaataagttagaggaacaaatatat----cattaactttcaaagttaatcacaaagttctaaattattaaataccttgatacca |
35922814 |
T |
|
| Q |
137 |
tgtgtctagaaaaagggaaacaaggacaatccattacattca |
178 |
Q |
| |
|
|| |||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
35922813 |
tgattctagaaaaagggaaacaaggaaaatcacttacattca |
35922772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 375
Target Start/End: Complemental strand, 35916462 - 35916322
Alignment:
| Q |
239 |
tctcttgtttctttcacatgcctccaaccacaacaa---aacaagccctaaaatactttcactgttttgtatctataaatagatagaaactaa-gatata |
334 |
Q |
| |
|
|||||||||||||||||||| ||||||| | ||||| || ||| ||| || | | ||| |||||| |||||||||||| |||||||| | |||||| |
|
|
| T |
35916462 |
tctcttgtttctttcacatggctccaacaagaacaaccaaataagtccttcaaaattgtcaatgtttttcatctataaatagttagaaacttatgatata |
35916363 |
T |
|
| Q |
335 |
tggaaaccaagttgagaataagatggagaaggtttctcttt |
375 |
Q |
| |
|
| |||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
35916362 |
ttgaaaccaagttgagaacaagatgaagaaggtttctcttt |
35916322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 35912219 - 35912129
Alignment:
| Q |
85 |
cattaagtttaaaagttaatcacaaagtgctaaattgttaaataacttgat--atgtgtctagaaaaagggaaacaaggacaatccattac |
173 |
Q |
| |
|
|||||| ||| ||||||||||||| ||| ||||| |||||||||||||||| ||| |||||||||| ||||||||| |||||||||||| |
|
|
| T |
35912219 |
cattaactttcaaagttaatcacatagtactaaaatgttaaataacttgatacatgattctagaaaaacggaaacaagaacaatccattac |
35912129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 375
Target Start/End: Complemental strand, 35912013 - 35911932
Alignment:
| Q |
295 |
cactgttttgtatctataaatagatagaaactaa-gatatatggaaaccaagttgagaataagatggagaaggtttctcttt |
375 |
Q |
| |
|
||||||||| |||||||||||| |||||||| | ||||||| ||| |||||||||||| |||||| ||||||||||||||| |
|
|
| T |
35912013 |
cactgtttttcatctataaatagttagaaacttatgatatattgaagccaagttgagaacaagatgaagaaggtttctcttt |
35911932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 35941721 - 35941632
Alignment:
| Q |
96 |
aaagttaatcacaaagtgctaaattgttaaataacttgat--atgtgtctagaaaaagggaaacaaggacaatccattacattcaaggagaa |
185 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| || | ||||||||||||||||| |
|
|
| T |
35941721 |
aaagttaattacaaagtgctaaattgttaaataacttgatacatgattctagaaaaaggaaaacaag--aaaacaattacattcaaggagaa |
35941632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 375
Target Start/End: Complemental strand, 35922658 - 35922588
Alignment:
| Q |
306 |
atctataaatagatagaaactaa-gatatatggaaaccaagttgagaataagatggagaaggtttctcttt |
375 |
Q |
| |
|
|||||||||| | |||||||| | ||||| | |||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
35922658 |
atctataaattgttagaaacttatgatatgttgaaaccaagttgagaacaagatgaagaaggtttctcttt |
35922588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 35941497 - 35941453
Alignment:
| Q |
331 |
tatatggaaaccaagttgagaataagatggagaaggtttctcttt |
375 |
Q |
| |
|
||||| |||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
35941497 |
tatatagaaatcaagttgagaacaagatggagaaggtttctcttt |
35941453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University