View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16923_high_13 (Length: 361)

Name: NF16923_high_13
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16923_high_13
NF16923_high_13
[»] chr4 (1 HSPs)
chr4 (20-311)||(2329910-2330201)


Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 2329910 - 2330201
Alignment:
Q  20 cttctaacatttcttcattattttctcaaacacctcttcactgttacttacttgcatcaatcctaattctctcattgatggctccacctgctagatccta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2329910 cttctaacatttcttcattattttctcaaacacctcttcactgttacttacttgcatcaatcctaattctctcattgatggctccacctgctagatccta 2330009  T
Q  120 tcatctacatggactcaaacttgcaacaataatcactgtgcttttcatctttttcttctgcatgctattttccaaatcaggtaattaaaaagctaccacc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2330010 tcatctacatggactcaaacttgcaacaataatcactgtgcttttcatctttttcttctgcatgctattttccaaatcaggtaattaaaaagctaccacc 2330109  T
Q  220 aacctcatacctattcaagctaaacaaaactgtttcaattttctgttgagaattaattctagaaatccgaatagttattttcattcatagtt 311  Q
      |||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||||||||||    
T  2330110 gtcctcatacctattcaagctaaacaaaactgtttcaattgtctgttgagaattatttgtagaaatccaaatagttattttcattcatagtt 2330201  T

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