View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16923_high_16 (Length: 311)

Name: NF16923_high_16
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16923_high_16
NF16923_high_16
[»] chr1 (1 HSPs)
chr1 (1-294)||(46736197-46736490)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 46736490 - 46736197
Alignment:
Q  1 ggaatctctggtctcaaattctgagcaagaatgaaagaaaagttgattataataaataggaaatttagaatgatgtatgaaacttaataaagtatttcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46736490 ggaatctctggtctcaaattctgagcaagaatgaaagaaaagttgaatataataaataggaaatgtagaatgatgtatgaaacttaataaagtatttcaa 46736391  T
Q  101 gagaaaatgtctatggatgaaaataatattaaaagatgacggcgttacagggagcactcttatgaatactttgatacttaataagagtaaatttagttaa 200  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46736390 gagaaaacatctatggatgaaaataatattaaaagatgacggcgttacagggagcactcttatgaatactttgatacttaataagagtaaatttagttaa 46736291  T
Q  201 aaatacttaatatttatggtcatatgatgacagcctaaagagtttactgtgtgatatataggaactaataaatgactaagcctatgtttgttta 294  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46736290 aaatacttaatatttatggtcatatgatgaaagcctaaagagtttactgtgtgatatataggaactaataaatgactaagcctatgtttgttta 46736197  T

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