View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16923_high_19 (Length: 283)

Name: NF16923_high_19
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16923_high_19
NF16923_high_19
[»] chr3 (7 HSPs)
chr3 (19-272)||(44523457-44523710)
chr3 (100-209)||(44524023-44524135)
chr3 (19-55)||(600548-600584)
chr3 (19-55)||(13896880-13896916)
chr3 (19-55)||(34691658-34691694)
chr3 (19-55)||(36817525-36817561)
chr3 (19-55)||(48246445-48246481)
[»] chr1 (4 HSPs)
chr1 (119-272)||(5750807-5750959)
chr1 (103-177)||(5750392-5750469)
chr1 (19-69)||(38127479-38127529)
chr1 (19-55)||(46216431-46216467)
[»] chr4 (2 HSPs)
chr4 (19-113)||(9013814-9013908)
chr4 (19-55)||(4786338-4786374)
[»] chr7 (3 HSPs)
chr7 (124-230)||(20353430-20353537)
chr7 (19-57)||(30791012-30791050)
chr7 (19-55)||(20353934-20353970)
[»] chr6 (6 HSPs)
chr6 (124-230)||(32555466-32555576)
chr6 (18-69)||(24721961-24722012)
chr6 (124-209)||(32555125-32555210)
chr6 (19-55)||(11840254-11840290)
chr6 (19-55)||(13388712-13388748)
chr6 (19-55)||(32643525-32643561)
[»] chr2 (3 HSPs)
chr2 (93-134)||(31974208-31974249)
chr2 (18-58)||(28472086-28472126)
chr2 (19-55)||(41183228-41183264)
[»] chr8 (5 HSPs)
chr8 (18-69)||(39491140-39491191)
chr8 (19-55)||(22577698-22577734)
chr8 (19-55)||(32383209-32383245)
chr8 (19-55)||(32437164-32437200)
chr8 (19-55)||(45133277-45133313)
[»] chr5 (3 HSPs)
chr5 (18-55)||(30354399-30354436)
chr5 (19-55)||(4204215-4204251)
chr5 (19-55)||(27532621-27532657)
[»] scaffold0794 (1 HSPs)
scaffold0794 (19-55)||(5304-5340)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 44523457 - 44523710
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgccgatgcatgctgaaaaactccttcgacactttactatcgaggaattgtttcatactttgtctc 118  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44523457 cagttaacaactgaggttttcctcggcagttaactgccgatgcatgctgaaaaactccttcgacactttactatcaaggaattgtttcatactttgtctc 44523556  T
Q  119 tttccacaagcacatcacttcaccttatgtggtgtttctttcacctcttcaaaacaccannnnnnngtttaacaaacaccattttcttgtcaataattta 218  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  44523557 tttccacaagcacatcacttcaccttctgtggtgtttctttcacctcttcaaaacaccatttttttgtttaacaaacaccattttcttgtcaataattta 44523656  T
Q  219 tggcatatgtacgatgtattaacatacaagccaaaattaacccacgctgttcat 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44523657 tggcatatgtacgatgtattaacatacaagccaaaattaacccacgctgttcat 44523710  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 209
Target Start/End: Complemental strand, 44524135 - 44524023
Alignment:
Q  100 ttgtttcatactttgtctctttccacaagcacatcacttcac--cttatgtg---gtgtttctttcacctcttcaaaacaccannnnnnngtttaacaaa 194  Q
    |||||||||| ||| |||||||||||||||||||||||||||  ||| ||||   |||||||||||||||||||||||| |||       ||||||||||    
T  44524135 ttgtttcatattttttctctttccacaagcacatcacttcacctcttctgtggtagtgtttctttcacctcttcaaaacgcca--tttttgtttaacaaa 44524038  T
Q  195 caccattttcttgtc 209  Q
    |||||||||| ||||    
T  44524037 caccattttcatgtc 44524023  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 600548 - 600584
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  600548 cagttaactaccgaggttttcctcgacagttaactgc 600584  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 13896880 - 13896916
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  13896880 cagttaactaccgaggttttcctcgacagttaactgc 13896916  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 34691694 - 34691658
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34691694 cagttaactaccgaggttttcctcgacagttaactgc 34691658  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 36817525 - 36817561
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  36817525 cagttaactaccgaggatttcctcgatagttaactgc 36817561  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 48246481 - 48246445
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  48246481 cagttaactaccgaggttttcctcgacagttaactgc 48246445  T

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Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 119 - 272
Target Start/End: Complemental strand, 5750959 - 5750807
Alignment:
Q  119 tttccacaagcacatcacttcaccttatgtggtgtttctttcacctcttcaaaacaccannnnnnngtttaacaaacaccattttcttgtcaataattta 218  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       ||||||| ||||||||||||||||||||||||||    
T  5750959 tttccacaagcacatcacttcaccttctgtggtgtttctttcacctcttcaaaacaccatttttc-gtttaacgaacaccattttcttgtcaataattta 5750861  T
Q  219 tggcatatgtacgatgtattaacatacaagccaaaattaacccacgctgttcat 272  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5750860 tggcatatgtaccatgtattaacatacaagccaaaattaacccacgctgttcat 5750807  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 5750392 - 5750469
Alignment:
Q  103 tttcatactttgtctctttccacaagcacatcacttcaccttatgtg---gtgtttctttcacctcttcaaaacacca 177  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||   ||||||| ||||||||||||||||||||    
T  5750392 tttcatactttttctctttccacaagcacatcacttcaccttctgtggtagtgtttcattcacctcttcaaaacacca 5750469  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 38127529 - 38127479
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgccgatgcatgctgaa 69  Q
    |||||||| ||||| ||||||||||  |||||||||||||||| |||||||    
T  38127529 cagttaactaccgaagttttcctcggcagttaactgccgatgcgtgctgaa 38127479  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 46216467 - 46216431
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  46216467 cagttaactaccgaagttttcctcgatagttaactgc 46216431  T

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Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 9013908 - 9013814
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgccgatgcatgctgaaaaactccttcgacactttactatcgaggaattgtttcatacttt 113  Q
    |||||||| | ||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  9013908 cagttaactatcgaggttttcctcggcagttaactgccgatgcgtgctgaaaaactccttcggcactttactaccgaggaattgtttcatacttt 9013814  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 4786338 - 4786374
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    ||||||||||||||||||||||||  |||||||||||    
T  4786338 cagttaacaaccgaggttttcctcagtagttaactgc 4786374  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 20353430 - 20353537
Alignment:
Q  124 acaagcacatcacttcaccttatgtggt---gtttctttcacctcttcaaaacaccannnnnnngtttaacaaacaccattttcttgtcaataatttatg 220  Q
    ||||||||||||||||||||| ||| ||   ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| ||||||    
T  20353430 acaagcacatcacttcaccttctgttgtagtgtttctttcacctcttcaaaacaccattttt--gtttaacaaacaccattttcttgtcaatattttatg 20353527  T
Q  221 gcatatgtac 230  Q
    ||||||||||    
T  20353528 gcatatgtac 20353537  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 30791012 - 30791050
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgccg 57  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  30791012 cagttaactaccgaggttttcctcggtagttaactgccg 30791050  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 20353934 - 20353970
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||| || |||||||||||||||||||||||||    
T  20353934 cagttaactactgaggttttcctcgatagttaactgc 20353970  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 32555576 - 32555466
Alignment:
Q  124 acaagcacatcacttcaccttatgtggt---gtttctttcacc---tcttcaaaacaccannnnnnngtttaacaaacaccattttcttgtcaataattt 217  Q
    ||||||||||||||||||||| | ||||   ||||||||||||   ||||||||||||||       |||||||||||||||||||||||||||||||||    
T  32555576 acaagcacatcacttcaccttctctggtagtgtttctttcaccacctcttcaaaacaccattttt--gtttaacaaacaccattttcttgtcaataattt 32555479  T
Q  218 atggcatatgtac 230  Q
    |||||||||||||    
T  32555478 atggcatatgtac 32555466  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 24721961 - 24722012
Alignment:
Q  18 acagttaacaaccgaggttttcctcgatagttaactgccgatgcatgctgaa 69  Q
    ||||||||| ||||||||||||||||  |||||||||||||||| |||||||    
T  24721961 acagttaactaccgaggttttcctcggcagttaactgccgatgcgtgctgaa 24722012  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 32555125 - 32555210
Alignment:
Q  124 acaagcacatcacttcaccttatgtggt---gtttctttcacctcttcaaaacaccannnnnnngtttaacaaacaccattttcttgtc 209  Q
    ||||| ||||||||||||||| ||||||   ||||||||||||||||||||||||||       |||||||||||||||||||| ||||    
T  32555125 acaagaacatcacttcacctt-tgtggtagtgtttctttcacctcttcaaaacacca--tttttgtttaacaaacaccattttcatgtc 32555210  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 11840254 - 11840290
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  11840254 cagttaactaccgaggttttcctcgacagttaactgc 11840290  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 13388712 - 13388748
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  13388712 cagttaactaccgaggttttcctcgacagttaactgc 13388748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 32643525 - 32643561
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  32643525 cagttaactaccgaggttttcctcgacagttaactgc 32643561  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 31974249 - 31974208
Alignment:
Q  93 cgaggaattgtttcatactttgtctctttccacaagcacatc 134  Q
    |||||| |||||||||||||| ||||||||||||||||||||    
T  31974249 cgaggagttgtttcatactttttctctttccacaagcacatc 31974208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 28472086 - 28472126
Alignment:
Q  18 acagttaacaaccgaggttttcctcgatagttaactgccga 58  Q
    ||||||||| |||||||||||| ||| ||||||||||||||    
T  28472086 acagttaactaccgaggttttcttcggtagttaactgccga 28472126  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 41183228 - 41183264
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||| |||||||||||||||| |||||||||||    
T  41183228 cagttaactaccgaggttttcctcggtagttaactgc 41183264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 39491140 - 39491191
Alignment:
Q  18 acagttaacaaccgaggttttcctcgatagttaactgccgatgcatgctgaa 69  Q
    |||||||||  ||||| |||||||||  ||||||||||||||||||||||||    
T  39491140 acagttaacttccgagattttcctcggcagttaactgccgatgcatgctgaa 39491191  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 22577734 - 22577698
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  22577734 cagttaactaccgaggttttcctcgacagttaactgc 22577698  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 32383209 - 32383245
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||| |||||||||||||||| |||||||||||    
T  32383209 cagttaactaccgaggttttcctcggtagttaactgc 32383245  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 32437164 - 32437200
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||| |||||||||||||||| |||||||||||    
T  32437164 cagttaactaccgaggttttcctcggtagttaactgc 32437200  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 45133277 - 45133313
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||||||||| |||||||||| |||||||||||    
T  45133277 cagttaacaaccgaagttttcctcggtagttaactgc 45133313  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 30354399 - 30354436
Alignment:
Q  18 acagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  30354399 acagttaactaccgaggttttcctcgacagttaactgc 30354436  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 4204215 - 4204251
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  4204215 cagttaactaccgaggttttcctcgacagttaactgc 4204251  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 27532621 - 27532657
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    ||||||||  |||||||||||||||||||||||||||    
T  27532621 cagttaactgccgaggttttcctcgatagttaactgc 27532657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 5340 - 5304
Alignment:
Q  19 cagttaacaaccgaggttttcctcgatagttaactgc 55  Q
    |||||||| |||||||||||||||| |||||||||||    
T  5340 cagttaactaccgaggttttcctcggtagttaactgc 5304  T

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