View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16923_high_23 (Length: 240)

Name: NF16923_high_23
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16923_high_23
NF16923_high_23
[»] chr4 (4 HSPs)
chr4 (10-222)||(34493559-34493770)
chr4 (10-222)||(34489127-34489342)
chr4 (114-222)||(34482242-34482350)
chr4 (115-164)||(34492486-34492535)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 34493770 - 34493559
Alignment:
Q  10 gagatgaatggttgtagtttcttctatggtgtttgaaatgatcagaagaaagaagagttgaagtgacattgagggatgtgtcttgaagaatttccatttt 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34493770 gagaagaatggttgtagtttcttctatggtgtttgaaatgatcagaagaaagaagagttgaagtgacattcagggatgtgtcttgaagaatttccatttt 34493671  T
Q  110 aattctaagtaacaagcttgactcaagcagcgggatcgacattattccagaataagtagaagnnnnnnnttgattgacaaaatggaaaagaaaattataa 209  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||       |||||||||||||||||||||||||||||||    
T  34493670 aattctaagtaacaagcttgactcaagcagcaggatcgacattattccagataaagtagaag-aaaaaattgattgacaaaatggaaaagaaaattataa 34493572  T
Q  210 tatatggacatta 222  Q
    |||||||||||||    
T  34493571 tatatggacatta 34493559  T

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Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 34489342 - 34489127
Alignment:
Q  10 gagatgaatggttgtagtttcttctatggtgtttgaaatgatcagaagaaagaagagttgaagtgacattgagg---gatgtgtcttgaagaatttccat 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||   ||||| |||||||||||||||||    
T  34489342 gagaagaatggttgtagtttcttctatggtgtttgaaatgatcagaagaaagaagagttgaggtaacattgagggatgatgtttcttgaagaatttccat 34489243  T
Q  107 tttaattctaagtaacaagcttgactcaagcagcgggatcgacattattccagaataagtagaagnnnnnnnttgattgacaaaatggaaaagaaaatta 206  Q
    |||||||||||||| ||||||||| ||||| ||  |  ||| |||||||||||||||||||||||       ||||||||||||||| |||| ||| |||    
T  34489242 tttaattctaagtatcaagcttgattcaagtagtagattcggcattattccagaataagtagaagaaaaaaattgattgacaaaatgaaaaataaattta 34489143  T
Q  207 taatatatggacatta 222  Q
    ||||||||||||||||    
T  34489142 taatatatggacatta 34489127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 34482350 - 34482242
Alignment:
Q  114 ctaagtaacaagcttgactcaagcagcgggatcgacattattccagaataagtagaagnnnnnnnttgattgacaaaatggaaaagaaaattataatata 213  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||||||| ||||||       |||||| ||||||||||||||||| | ||||||||    
T  34482350 ctaagtaacaagcttgattcaagcagcaggatcggcattattccagaataattagaagaaaaaaattgattcacaaaatggaaaagaaattaataatata 34482251  T
Q  214 tggacatta 222  Q
    |||| ||||    
T  34482250 tggaaatta 34482242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 34492535 - 34492486
Alignment:
Q  115 taagtaacaagcttgactcaagcagcgggatcgacattattccagaataa 164  Q
    |||| ||||||||||| ||||||||| |||||||||||||||||||||||    
T  34492535 taagcaacaagcttgattcaagcagcaggatcgacattattccagaataa 34492486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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