View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16923_high_5 (Length: 582)
Name: NF16923_high_5
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16923_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 7e-72; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 54 - 251
Target Start/End: Complemental strand, 32868394 - 32868193
Alignment:
| Q |
54 |
aaaaatgaaaatttatatgaaaattcaaacactaacaccagggacggatgtattcatatcaatacgtgggctagacctagtgcccccattaatatattgg |
153 |
Q |
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| T |
32868394 |
aaaaaagagaatttatatgaaaattcaaacactaacaccagggacggatgtattcatatcaatacgtgggctagacctagtgcccccattaatatattgg |
32868295 |
T |
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| Q |
154 |
c-----actcaattgtaattcttgctctctaatatgttgnnnnnnnagaagaataaaatacaaagtgtcgtacttgatagtatagtaaacaatatcatga |
248 |
Q |
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| T |
32868294 |
cactaaactcaattgtaattcttgctatct-atatgttgtttttttagaagaataaaatgcaaagtgtcgtacttgatagtatagtaaacaatatcatga |
32868196 |
T |
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| Q |
249 |
atg |
251 |
Q |
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||| |
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| T |
32868195 |
atg |
32868193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 252 - 366
Target Start/End: Complemental strand, 32868130 - 32868031
Alignment:
| Q |
252 |
tttattacttatgtgtttgatgatgaatgagttgatgcacggatcaataaaaatgctataatatttatttatttaaaagcagattcagtctaacggtgta |
351 |
Q |
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| T |
32868130 |
tttattacttatgtgtttgatgatgaatgagttgatgcacggatcaataaaaatg---------------atttaaaagcagattcagtctaacggtgta |
32868046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 482 - 563
Target Start/End: Complemental strand, 32867978 - 32867885
Alignment:
| Q |
482 |
ttattatgtaaacaattttacgcatgcata--aaaatcac----atatataaatgccc------ccacaacctaaatatcctggatctgtcact |
563 |
Q |
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| T |
32867978 |
ttattatgtaaacaattttacgcatgcataataaaatcacatatatatataaatgcccccacaaccacaacctaaatatcctggatctgtcact |
32867885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 32868039 - 32867999
Alignment:
| Q |
381 |
aatattttatatcctccatttattaaacgcagtaagatatt |
421 |
Q |
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| T |
32868039 |
aatattttatatcctccatttattaaacacagtaagatatt |
32867999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 50821181 - 50821258
Alignment:
| Q |
4 |
tttgatttttatgacatagatctatcaaaaaagtacatgatattgagtagaaaaatgaaaatttatatgaaaattcaaa |
82 |
Q |
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| T |
50821181 |
tttgatttttatgaaacaaatctattaaaaaa-tacatgatatttagtagataaatgagaatttctatgaaaattcaaa |
50821258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 50854680 - 50854603
Alignment:
| Q |
4 |
tttgatttttatgacatagatctatcaaaaaagtacatgatattgagtagaaaaatgaaaatttatatgaaaattcaaa |
82 |
Q |
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| T |
50854680 |
tttgatttttatgaaacaaatctattaaaaaa-tacatgatatttagtagataaatgagaatttctatgaaaattcaaa |
50854603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 50821271 - 50821312
Alignment:
| Q |
50 |
gtagaaaaatgaaaatttatatgaaaattcaaacactaacac |
91 |
Q |
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||||| |||||| ||||| ||||||||||||||||||||||| |
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| T |
50821271 |
gtagataaatgagaatttctatgaaaattcaaacactaacac |
50821312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 50854590 - 50854549
Alignment:
| Q |
50 |
gtagaaaaatgaaaatttatatgaaaattcaaacactaacac |
91 |
Q |
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| T |
50854590 |
gtagataaatgagaatttctatgaaaattcaaacactaacac |
50854549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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