View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16923_high_9 (Length: 406)
Name: NF16923_high_9
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16923_high_9 |
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| [»] scaffold0002 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 387
Target Start/End: Complemental strand, 30208835 - 30208461
Alignment:
| Q |
13 |
gtgagatgaagtgagcgtgccaagaagagtagcagatcattgaacgaggattacttgtcagatgtagaggaggagctggaagttaagaagatcaagggga |
112 |
Q |
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| T |
30208835 |
gtgagaagaagtgagcgtgccaagaagagtagcagatcattgaacgaggattacttgttagatgtagaggaggagctggaagttaagaagattaagggga |
30208736 |
T |
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| Q |
113 |
aacgtggtaggaagaagaaggtggcaaccggtgttggtgttactgatgaaatcaatgctgctcaggagggggagaattctgaatgcattgaacagcaaca |
212 |
Q |
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| T |
30208735 |
aacgtggtaggaagaagaaggtggcaaccggtgttggtgttactgatgaaatcaatgctgctcaggagggggagaatcctgaatgcattgaacagcaaca |
30208636 |
T |
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| Q |
213 |
gatggtaacatcatatgatctttttgttaatttttatttcatgttgtagatatatgtttgaattttgagttacatgttgtattgtatgtaattgtggttc |
312 |
Q |
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| T |
30208635 |
gatggtaacatcatatgatctttttgttaatttttatttcatgttgtagatatatgtttgaattttgagttacatgttgtattgtatgtaattgtggttc |
30208536 |
T |
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| Q |
313 |
tgttactgtttctcaatcaataggggatcgaagatgggtccttattggtctgtaataaggacactaattgccatc |
387 |
Q |
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| T |
30208535 |
tgttactgtttctcaatcaataggggattgaagatgggtccttattggtctgtaataaggacactaattgccatc |
30208461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 51454862 - 51454923
Alignment:
| Q |
295 |
tgtatgtaattgtggttctgttactgtttctcaatcaataggggatcgaagatgggtcctta |
356 |
Q |
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| T |
51454862 |
tgtatgtaattgtggttctgttactgtttttcaatcaacagtggattgaagagggatcctta |
51454923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 51496349 - 51496401
Alignment:
| Q |
294 |
ttgtatgtaattgtggttctgttactgtttctcaatcaataggggatcgaaga |
346 |
Q |
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| T |
51496349 |
ttgtatgtaattgtgattctgttaatgtttctcaatcaacagtggatcgaaga |
51496401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 411065 - 410994
Alignment:
| Q |
32 |
ccaagaagagtagcagatcattgaacgaggattacttgtcagatgtagaggaggagctggaagttaagaaga |
103 |
Q |
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| T |
411065 |
ccaagaagagtagtagatcattgaaggatgattacatgtcagatgtggaggaggaagtggaagtgaagaaga |
410994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 422545 - 422487
Alignment:
| Q |
218 |
taacatcatatgatctttttgttaatttttatttcatgttgtagatatatgtttgaatt |
276 |
Q |
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| T |
422545 |
taacatcacatgatctttttgctaattttaatttcactttgtagatatatgtttgaatt |
422487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 426547 - 426477
Alignment:
| Q |
225 |
atatgatctttttgttaatttttatttcatgttgtagatatatgtttgaattttgagttacatgttgtatt |
295 |
Q |
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| T |
426547 |
atatgatatttttgctaattttaatttcactttgtagatatgtgtttgagcttggagttacatgttgtatt |
426477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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