View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16923_low_10 (Length: 394)
Name: NF16923_low_10
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16923_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 648825 - 648447
Alignment:
| Q |
1 |
atcaagagaagccagtggaatatgcaaacagacaaatcataaaaggcatggtgcaattagattgaaagtcactgaaagtgtgagtgtgatttaatatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
648825 |
atcaagagaagccagtggaatatgcaaacagacaaatcataaaaggcatggtgcaattagattgaaagtcactgaaagtgtgagtgtgatttaatatttt |
648726 |
T |
|
| Q |
101 |
aaaatttaaaagtctggtgtgtttaagacaaatcttcatttattcagagcaaaagctagcaatgtttaaatactgggtgtaatttagaaaagtaatataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
648725 |
aaaatttaaaagtctggtgtgtttaagacaaatcttcatttattcagaacaaaagctagcaatgtttaaatactgggtgtaatttagaaaagtaatataa |
648626 |
T |
|
| Q |
201 |
tgttttagcataattgaaattttaggacttgttgttggttttgagaaaatgttcatgttttcatgtttagattgcatcgtctattactatctttaagcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
648625 |
tgttttagcataattgaaattttaggacttgttgttggttttgagaaaatgttcatgttttcatgtttagattgcatcgtctattactatctttaagcag |
648526 |
T |
|
| Q |
301 |
tacaatcaatataaatctctcctttatatccatattttttgagatactaagcttgattaaattgaaaaacctaaaacat |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
648525 |
tacaatcaatataaatctctcctttatatccatattttttgagatactaagcttgattaaattgaaaaacctaaaacat |
648447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 686222 - 685955
Alignment:
| Q |
1 |
atcaagagaagccagtggaatatgcaaacagacaaatcataaaaggcatggtgcaattagattgaaagtcactgaaagtgtgagtgtgatttaatatttt |
100 |
Q |
| |
|
||||||||| | |||| ||||||||||||||| ||| ||||||||| ||| | ||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
686222 |
atcaagagacggcagttgaatatgcaaacagataaaccataaaaggtatgatacaactagattgaaagtcactgaaagtgtgagtgtgatt-aatatttt |
686124 |
T |
|
| Q |
101 |
aaaatttaaaagtctggtgtgtttaagacaaatcttcatttattcagagcaaaagctagcaatgtttaaatactgggtgtaatttagaaaagtaatataa |
200 |
Q |
| |
|
||||||||||||||| | |||| || |||||| |||||||||| ||| ||||||||||||||||| || ||||||||||||||| |||||| ||| | |
|
|
| T |
686123 |
aaaatttaaaagtcta-tctgttcaa-acaaatattcatttattaagaaaaaaagctagcaatgtttgaaaactgggtgtaatttataaaagttctatta |
686026 |
T |
|
| Q |
201 |
tgttttagcataattgaaattttaggacttgttgttggttttgagaaaatgttcatgttttcatgtttagatt |
273 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| |||||| |||| |
|
|
| T |
686025 |
tgttttagcataactgaaattttaggacttgtttttgg--ttgagaaaatgttcatgtttttatgtttggatt |
685955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 357
Target Start/End: Complemental strand, 685706 - 685620
Alignment:
| Q |
271 |
attgcatcgtctattactatctttaagcagtacaatcaatataaatctctc-ctttatatccatattttttgagatactaagcttgat |
357 |
Q |
| |
|
||||||||| ||||| |||||| | | ||||||||| | | | |||||||| |||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
685706 |
attgcatcgcctattgctatctatgatcagtacaattatt-tcaatctctctctttgtatccatattttttgagatacgaagcttgat |
685620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University