View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16923_low_11 (Length: 389)

Name: NF16923_low_11
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16923_low_11
NF16923_low_11
[»] chr4 (3 HSPs)
chr4 (1-383)||(34347160-34347540)
chr4 (101-187)||(17621948-17622035)
chr4 (7-91)||(21014686-21014771)
[»] chr1 (3 HSPs)
chr1 (200-302)||(36353213-36353319)
chr1 (201-300)||(13091912-13092013)
chr1 (6-138)||(46831149-46831282)
[»] chr3 (4 HSPs)
chr3 (223-311)||(34365838-34365927)
chr3 (134-187)||(44112006-44112059)
chr3 (94-137)||(29636343-29636386)
chr3 (107-187)||(41767177-41767258)
[»] chr2 (4 HSPs)
chr2 (30-183)||(10003585-10003740)
chr2 (223-307)||(25642922-25643007)
chr2 (94-165)||(9044154-9044225)
chr2 (94-138)||(11929119-11929163)
[»] chr6 (2 HSPs)
chr6 (201-245)||(2575830-2575874)
chr6 (201-245)||(2604707-2604751)
[»] chr8 (3 HSPs)
chr8 (19-138)||(36036577-36036695)
chr8 (201-299)||(11623503-11623606)
chr8 (49-116)||(10873381-10873449)
[»] scaffold0027 (1 HSPs)
scaffold0027 (94-187)||(25778-25872)
[»] chr7 (2 HSPs)
chr7 (200-288)||(3127233-3127323)
chr7 (96-150)||(687358-687412)


Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 34347540 - 34347160
Alignment:
Q  1 ttttaattttttctaaaagaaagtgttgtaaatatctatgacaaataagttgatgacatcatttgaaatttttgagtttgttaaagctgcatgtgttatc 100  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34347540 ttttaattttttctgaaagaaagtgttgtaaatatctatgccaaataagttgatgacatcatttgaaatttttgagtttgttaaagctgcatgtgttatc 34347441  T
Q  101 caaatgtttcaattgtgtatcggattctcttaactatgccgatgactattacatctgcagaaaaagtttttcgaagttaaaattattnnnnnnnctatct 200  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  34347440 caaatgtttcaattgtgtatcggattct--taactatgccaatgactattacatctgcagaaaaagtttttcgaagttaaaattattaaaaaaactatct 34347343  T
Q  201 agatcgtcaatgtaacaaaaatgttgaatgatctagtcattttatatggtgaaaaagatatgtagaacatattgatatagacataattattagtgacttt 300  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34347342 agatcgtcaatgtgacaaaaatgttgaatgatctagtcattttatatactgaaaaagatatgtagaacatattgatatagacataattattagtgacttt 34347243  T
Q  301 atatctataaaaactataaattgacccaaaataaagtgtgcgtaaatttaaaatttagattgaacaatattcatttcataata 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34347242 atatctataaaaactataaattgacccaaaataaagtgtgcgtaaatttaaaatttagattgaacaatatttatttcataata 34347160  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 187
Target Start/End: Complemental strand, 17622035 - 17621948
Alignment:
Q  101 caaatgtttcaattgtgtatcggattctcttaactatgccgatgactattacatctgcagaaa-aagtttttcgaagttaaaattatt 187  Q
    |||||||||||||||  ||||  ||||||||||||||| |||||| | ||  || || ||||| ||||||||||||||||||||||||    
T  17622035 caaatgtttcaattgcttatcaaattctcttaactatgtcgatgattgttgtatgtgtagaaagaagtttttcgaagttaaaattatt 17621948  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 21014686 - 21014771
Alignment:
Q  7 ttttttctaaaa-gaaagtgttgtaaatatctatgacaaataagttgatgacatcatttgaaatttttgagtttgttaaagctgca 91  Q
    |||||||||||  ||| |||||| |||| ||| || |||||| ||||||| || ||||||||||| |||||||||| |||||||||    
T  21014686 ttttttctaaatcgaaggtgttgcaaatgtctttgtcaaatatgttgatgtcagcatttgaaattcttgagtttgtcaaagctgca 21014771  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 302
Target Start/End: Original strand, 36353213 - 36353319
Alignment:
Q  200 tagatcgtcaatgtaacaaaaat---gttgaatgatctagtcattttatatggtgaaaaagatatg-tagaacatattgatatagacataattattagtg 295  Q
    |||||||||||||| |||||||    |||||||| | ||  ||||||||||  ||| ||||||||| ||||| |||||||| ||||||||||||||||||    
T  36353213 tagatcgtcaatgtcacaaaaaaaaagttgaatggtttaaccattttatatattgagaaagatatgctagaatatattgatgtagacataattattagtg 36353312  T
Q  296 actttat 302  Q
    |||||||    
T  36353313 actttat 36353319  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 300
Target Start/End: Complemental strand, 13092013 - 13091912
Alignment:
Q  201 agatcgtcaatgtaacaa-aaatgttgaatgatctagtcattttatatggtgaaaaagatatg-tagaacatattgatatagacataattattagtgact 298  Q
    ||||||||||| | |||| ||| || |||||||||||||||||||| |  ||| ||| ||||| |||||||||||||| | |||| | ||||||||||||    
T  13092013 agatcgtcaatatcacaagaaaagtggaatgatctagtcattttatgtattgagaaatatatgatagaacatattgatgttgacacatttattagtgact 13091914  T
Q  299 tt 300  Q
    ||    
T  13091913 tt 13091912  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 138
Target Start/End: Complemental strand, 46831282 - 46831149
Alignment:
Q  6 attttttctaaaagaaagtgttgtaaatatctatgacaaataagttgatgacatcatttgaaatttttgagtttgttaaagctgcat-gtgttatccaaa 104  Q
    ||||||| |||  |||||||||| |||||| |  | |||||||||||||  || |||||||||||   |||| ||||||||| | ||  ||||||| |||    
T  46831282 attttttttaatcgaaagtgttgaaaatatattagccaaataagttgatttcaacatttgaaattcacgagtctgttaaagccgtatattgttatcaaaa 46831183  T
Q  105 tgtttcaattgtgtatcggattctcttaactatg 138  Q
    | ||| |||||| | ||| |||||||||||||||    
T  46831182 tattttaattgtttgtcgaattctcttaactatg 46831149  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 311
Target Start/End: Original strand, 34365838 - 34365927
Alignment:
Q  223 gttgaatgatctagtcattttatatggtgaaaaagatatg-tagaacatattgatatagacataattattagtgactttatatctataaa 311  Q
    |||||||||||||| |||||| |||  |||||| |||||| ||||| |||| ||  |||||| |||||||||||||||| ||||||||||    
T  34365838 gttgaatgatctagccattttttatattgaaaaggatatgatagaatatatcgacgtagacacaattattagtgactttgtatctataaa 34365927  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 44112006 - 44112059
Alignment:
Q  134 ctatgccgatgactattacatctgcagaaaaagtttttcgaagttaaaattatt 187  Q
    ||||| |||||||||| |||| |||| || ||||||||||||||||||||||||    
T  44112006 ctatgtcgatgactatgacatttgcaaaagaagtttttcgaagttaaaattatt 44112059  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 29636386 - 29636343
Alignment:
Q  94 tgttatccaaatgtttcaattgtgtatcggattctcttaactat 137  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||    
T  29636386 tgttatccgaatgtttcaattgtttatcgaattctcttaactat 29636343  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 41767177 - 41767258
Alignment:
Q  107 tttcaattgtgtatcggattctcttaactatgccgatgactattacatctgcagaaa-aagtttttcgaagttaaaattatt 187  Q
    |||||||||  ||||| |||||||||| |||| |||||| | || ||| || ||||| ||||||||||||||||||| ||||    
T  41767177 tttcaattgcttatcgaattctcttaattatgtcgatgattgttgcatgtgtagaaagaagtttttcgaagttaaaagtatt 41767258  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 10003585 - 10003740
Alignment:
Q  30 aaatatctatgacaaataagttgatgacatcatttgaaatttttgagtttgttaaagctgc--atgtgttatccaaatgtttcaattgtgtatcggattc 127  Q
    |||||||| || |||||  ||||||| || ||||||||||| |||||||||| ||| |  |  || ||||||||||| ||||||| ||  ||||| ||||    
T  10003585 aaatatctttgccaaatgtgttgatgtcaacatttgaaattcttgagtttgtcaaatccaccgat-tgttatccaaacgtttcaagtgcttatcgaattc 10003683  T
Q  128 tcttaactatgccgatgactattacatctgcagaaa-aagtttttcgaagttaaaat 183  Q
    |||||||||| ||||||| | || ||| |  ||||| ||||||||||||||||||||    
T  10003684 tcttaactataccgatgattgttgcatttatagaaagaagtttttcgaagttaaaat 10003740  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 25643007 - 25642922
Alignment:
Q  223 gttgaatgatctagtcattttatatggtgaaaaagatatg-tagaacatattgatatagacataattattagtgactttatatcta 307  Q
    |||||||| |||||||||||||| |  ||||| | ||| | |||||||||||||| |||||| |||||||| ||||||||||||||    
T  25643007 gttgaatggtctagtcattttatgtattgaaacaaatacgatagaacatattgatgtagacacaattattaatgactttatatcta 25642922  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 9044154 - 9044225
Alignment:
Q  94 tgttatccaaatgtttcaattgtgtatcggattctcttaactatgccgatgactattacatctgcagaaaaa 165  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||  | || ||||| |||||||| |||||    
T  9044154 tgttatccaaatatttcaattgtttattggattctcttaactatgttggtgtctattgcatctgcataaaaa 9044225  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 11929119 - 11929163
Alignment:
Q  94 tgttatccaaatgtttcaattgtgtatcggattctcttaactatg 138  Q
    |||||||||||||||||||||   ||||| |||||||||||||||    
T  11929119 tgttatccaaatgtttcaatttcttatcgaattctcttaactatg 11929163  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 2575874 - 2575830
Alignment:
Q  201 agatcgtcaatgtaacaaaaatgttgaatgatctagtcattttat 245  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||    
T  2575874 agatcgtcaatgtcacaaaaatgttgaatgatctagccattttat 2575830  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 2604751 - 2604707
Alignment:
Q  201 agatcgtcaatgtaacaaaaatgttgaatgatctagtcattttat 245  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||    
T  2604751 agatcgtcaatgtcacaaaaatgttgaatgatctagccattttat 2604707  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 36036695 - 36036577
Alignment:
Q  19 gaaagtgttgtaaatatctatgacaaataagttgatgacatcatttgaaatttttgagtttgttaaagctgcatgtgttatccaaatgtttcaattgtgt 118  Q
    ||||||||||||||| | | || ||||||  | |||| || ||||||||||||| || |||||||||| ||||  |||||||  ||| |||||||||  |    
T  36036695 gaaagtgttgtaaatgtatttgtcaaatatttcgatgtcaacatttgaaattttcga-tttgttaaagttgcagttgttatctgaatatttcaattgctt 36036597  T
Q  119 atcggattctcttaactatg 138  Q
    |||| |||||||||||||||    
T  36036596 atcgaattctcttaactatg 36036577  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 299
Target Start/End: Complemental strand, 11623606 - 11623503
Alignment:
Q  201 agatcgtcaatgtaacaa-aaatgttgaatgatctagtcattttatatggtgaaaaagatatg-tagaaca---tattgatatagacataattattagtg 295  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||||| |  ||| | | ||||| |||||||   ||||||| |||||| |||||||||||    
T  11623606 agatcgtcaatgtcacaagaaaggttgaatgatctagtcattttatgtattgagataaatatgatagaacatactattgatgtagacacaattattagtg 11623507  T
Q  296 actt 299  Q
    ||||    
T  11623506 actt 11623503  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 10873449 - 10873381
Alignment:
Q  49 gttgatgacatcatttgaaatttttgagtttgttaaagctgcatgt-gttatccaaatgtttcaattgt 116  Q
    ||||||| || ||||| ||| |||||||||||| ||||  |||| | ||||||||||||||||||||||    
T  10873449 gttgatgtcaacattttaaaattttgagtttgtcaaagtcgcatattgttatccaaatgtttcaattgt 10873381  T

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Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 187
Target Start/End: Complemental strand, 25872 - 25778
Alignment:
Q  94 tgttatccaaatgtttcaattgtgtatcggattctcttaactatgccgatgactattacatctgcagaaa-aagtttttcgaagttaaaattatt 187  Q
    |||||||  ||||||||| |||  ||||| |||| ||||| |  ||||||||||||  |||||| ||||| ||||||||||||||||||||||||    
T  25872 tgttatctgaatgtttcagttgcttatcgaattcacttaattgcgccgatgactatggcatctgtagaaagaagtttttcgaagttaaaattatt 25778  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 3127233 - 3127323
Alignment:
Q  200 tagatcgtcaatgtaacaa-aaatgttgaatgatctagtcattttatatggtgaaaaagatatg-tagaacatattgatatagacataatt 288  Q
    |||||||||||||| |||| ||||||| |||| ||||| |||||||| |  ||| ||||||||| |||||||||||||| |||| ||||||    
T  3127233 tagatcgtcaatgtcacaagaaatgttaaatgctctagccattttatgtattgagaaagatatgatagaacatattgatgtagaaataatt 3127323  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 687412 - 687358
Alignment:
Q  96 ttatccaaatgtttcaattgtgtatcggattctcttaactatgccgatgactatt 150  Q
    |||| ||||||||||||||   ||||| ||||||||||||||| |||||||||||    
T  687412 ttatgcaaatgtttcaattccatatcgaattctcttaactatgtcgatgactatt 687358  T

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