View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16923_low_12 (Length: 385)
Name: NF16923_low_12
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16923_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 375
Target Start/End: Complemental strand, 37602261 - 37601900
Alignment:
| Q |
15 |
atcatatgtacaactatgaattggcataaatttaaaagttttccaaagatttttggaattcctttcaaggagaaagtaaaaataaaatgatatgcaatag |
114 |
Q |
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| T |
37602261 |
atcatatgtacaactatgaattggcataaatttaaaagttttccaaagatttttggaattcctttcaaggagaaagtaaaaataaaatgatatgcaatag |
37602162 |
T |
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| Q |
115 |
taaaaaacagaatcatgttcataatgaagcagcaaaagacgctgtatatacagcactcattacatttatacttttataaagttggtatgaagtagcaaaa |
214 |
Q |
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| T |
37602161 |
taaaaaacagaatcatgttcatgatgaagcagcaaaagacgctgtatatacagcactcattacatttatacttttataaagttggtatgaagtagcaaaa |
37602062 |
T |
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| Q |
215 |
gaaagcactagttcaataac-nnnnnnnnnggcaagcatgagctcaaagaaaataacaccagataaattcttataagaaataggatgcataataatgaca |
313 |
Q |
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| T |
37602061 |
gaaagcactagttcaataacaaaaaaaaaaagcaagcatgagctcaaagaaaataacaccaggtaaattcttataagaaataggatgcataataatgaca |
37601962 |
T |
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| Q |
314 |
ctattaaaacctctaagtacctctttaaatctaacaatattgggatgcttcaatgacctatg |
375 |
Q |
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| T |
37601961 |
ctattaaaacctctaagtacctctttaaatctaacaatattgggatgcttcaatgacctatg |
37601900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 39410729 - 39410685
Alignment:
| Q |
331 |
tacctctttaaatctaacaatattgggatgcttcaatgacctatg |
375 |
Q |
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| T |
39410729 |
tacctctttaaatctaatgatattgggatgcttcaaggacctatg |
39410685 |
T |
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