View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16923_low_14 (Length: 344)

Name: NF16923_low_14
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16923_low_14
NF16923_low_14
[»] chr4 (5 HSPs)
chr4 (18-341)||(48961200-48961525)
chr4 (40-342)||(48958075-48958377)
chr4 (85-320)||(48912313-48912548)
chr4 (40-338)||(48965260-48965555)
chr4 (67-190)||(48974076-48974199)
[»] scaffold0536 (3 HSPs)
scaffold0536 (85-342)||(6457-6714)
scaffold0536 (85-342)||(10439-10696)
scaffold0536 (50-190)||(1551-1691)
[»] chr8 (1 HSPs)
chr8 (77-342)||(12641427-12641692)
[»] chr2 (3 HSPs)
chr2 (40-342)||(13448294-13448593)
chr2 (40-342)||(13454765-13455064)
chr2 (94-342)||(13440185-13440430)
[»] chr6 (2 HSPs)
chr6 (41-290)||(12590167-12590419)
chr6 (124-329)||(12483423-12483631)
[»] chr7 (1 HSPs)
chr7 (124-342)||(3417476-3417691)
[»] chr5 (2 HSPs)
chr5 (124-339)||(12540700-12540912)
chr5 (220-342)||(28385445-28385564)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 48961200 - 48961525
Alignment:
Q  18 tctctcttcaataccatccacccaccattctgctgcaccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttca 117  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||    
T  48961200 tctctcttcaataccatccacacaccattctgttgcaccaacttcaattccaataccccgcacatcagttatcaacttctcgttgtagaattgttctcca 48961299  T
Q  118 tgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggag--ttccacccgcaatgcgtcataaacacacccaccgctgtgtggcc 215  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  48961300 tgtacgggccatgttatcattgggatccctgcactaccagcctcaatggtggagagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcc 48961399  T
Q  216 caggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48961400 caggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaaccacttgtctttctcc 48961499  T
Q  316 tcttcgctctcatccactttcccttt 341  Q
    ||||||||||||||||||||||||||    
T  48961500 tcttcgctctcatccactttcccttt 48961525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 40 - 342
Target Start/End: Original strand, 48958075 - 48958377
Alignment:
Q  40 caccattctgctgcaccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattg 139  Q
    ||||| |||| ||||||||| || |  ||||| ||  |||||| ||||||||||||||| |||||||||| |||| |||| || |||||||| |||||||    
T  48958075 caccactctgttgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattg 48958174  T
Q  140 ggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggccca 239  Q
    | | ||| || ||||||||||| |  |||||||||||||||||||| ||||||||  ||||||| ||  |||||| ||| |||| |||||||||||||||    
T  48958175 gaacccccgcgctaacagcctccacagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggccca 48958274  T
Q  240 ccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccct 339  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||| |||||||||| |||||||||  ||||||||||||| ||||| ||  ||||||||    
T  48958275 ccccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgtcttctttccct 48958374  T
Q  340 ttc 342  Q
    |||    
T  48958375 ttc 48958377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 85 - 320
Target Start/End: Complemental strand, 48912548 - 48912313
Alignment:
Q  85 gttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaat 184  Q
    |||||||||||||| ||||| || | |||| |||| |  |||||||| |||||||| | |||||||||||| |||||||  ||||| |||||||| ||||    
T  48912548 gttatcaacttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaat 48912449  T
Q  185 gcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttc 284  Q
    | ||||||||  ||||||| |||||||||| ||| |||||||| ||||| ||||| |||||||| |||| | ||||||||||| | ||  ||||||||||    
T  48912448 gtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttc 48912349  T
Q  285 aaatcctttcgccaaccacttgtctttctcctcttc 320  Q
    ||| || || | |||||| || ||||||||||||||    
T  48912348 aaacccctttggcaaccatttttctttctcctcttc 48912313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 40 - 338
Target Start/End: Original strand, 48965260 - 48965555
Alignment:
Q  40 caccattctgctgcaccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattg 139  Q
    |||||||||| |||||||||||| | |||||| ||  |||| || |||||||  || ||||||||||||| |||| |||||   ||||| || ||||| |    
T  48965260 caccattctgttgcaccaacttccactccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcg 48965359  T
Q  140 ggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggccca 239  Q
    | | ||| |||| ||||||||| |  ||||||||||| || ||||| ||||||||  ||||||| || | ||||| ||| |||| ||| || || |||||    
T  48965360 gaacccccgcaccaacagcctccactgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagccca 48965459  T
Q  240 ccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccc 338  Q
     ||| |||| ||||||||   ||||||| |||||||||||||||| ||||| || |  |||||||| |  ||||||||||| ||||||||| |||||||    
T  48965460 acccctaataatcaaacc---cttctttccaatgtttctctcttcgaatccctttggtaaccacttttgcttctcctcttcactctcatcctctttccc 48965555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 67 - 190
Target Start/End: Original strand, 48974076 - 48974199
Alignment:
Q  67 ccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatgg 166  Q
    ||||||||| |||| | |||||||||||||||||||||||||| ||| ||||| || |||||||| |||||||| | |||||||||||| || || | ||    
T  48974076 ccaataccccgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaacggcttccacgg 48974175  T
Q  167 tggagttccacccgcaatgcgtca 190  Q
    ||||||||||||||||||| ||||    
T  48974176 tggagttccacccgcaatgtgtca 48974199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 85 - 342
Target Start/End: Complemental strand, 6714 - 6457
Alignment:
Q  85 gttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaat 184  Q
    ||||||||||| || ||||| |||| |||| |||| || |||||||| ||||| || | ||||||||||||||||||||  ||||| |||||||| ||||    
T  6714 gttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaat 6615  T
Q  185 gcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttc 284  Q
    ||||||||||| ||||||  ||| |||||| ||  |||||||||||||| ||||| ||| |||| |||||||||||||||||| | || |||||||||||    
T  6614 gcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttc 6515  T
Q  285 aaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttc 342  Q
     ||||| || | |||||| ||  ||||||||||||| ||||||||  |||||||||||    
T  6514 gaatccctttggcaaccattttcctttctcctcttcactctcatcttctttccctttc 6457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 85 - 342
Target Start/End: Complemental strand, 10696 - 10439
Alignment:
Q  85 gttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaat 184  Q
    |||||||||||||| ||||| |||| |||| |||| |  |||||||| |||||||| | |||||||||||| ||||| | |||||| |||||||| ||||    
T  10696 gttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattccacccacaat 10597  T
Q  185 gcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttc 284  Q
    | ||||||||| |||||||  | |||||||  || |||||||| || |||||||| |||||||| |||||||||||||||||| ||||   ||| |||||    
T  10596 gtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttctttgcaataactctttcttc 10497  T
Q  285 aaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttc 342  Q
    |||||||||||  | ||| || |||||||||||||  ||||||| | |||||||||||    
T  10496 aaatcctttcggtagccatttttctttctcctcttgactctcattctctttccctttc 10439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 1691 - 1551
Alignment:
Q  50 ctgcaccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgc 149  Q
    ||||||| ||||| | |||||| || ||||| | |||||||||| | ||||| |||||||  ||   |||||| ||||| || |||||||| || |||||    
T  1691 ctgcaccgacttccactccaatcccatgcacctgagttatcaacgtttcgttatagaattgatcactatgtactggccatgtgatcattggaattcctgc 1592  T
Q  150 actaacagcctcaatggtggagttccacccgcaatgcgtca 190  Q
    ||||||||||||  |  | ||||||||||| ||||| ||||    
T  1591 actaacagcctcggttatagagttccacccacaatgtgtca 1551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 77 - 342
Target Start/End: Complemental strand, 12641692 - 12641427
Alignment:
Q  77 gcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttcca 176  Q
    ||||| ||||||||| |||||| || ||||| | |||| | || || |||||||| |||||||| |||||||||||||||||||| |    ||||||| |    
T  12641692 gcacaacagttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctgcactaacagcctctaccaaggagttcga 12641593  T
Q  177 cccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgttt 276  Q
    ||||||||||||||| ||  ||||||| || | |||||  |  ||||| ||||||||||||||| || ||||||| ||||| ||||| |||||||  |||    
T  12641592 cccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataaaacctttcttattttcaacattt 12641493  T
Q  277 ctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccctttc 342  Q
    |||||||| |||||||| | ||||||||| |||||||||||||| ||||||||   ||||||||||    
T  12641492 ctctcttcgaatcctttaggcaaccacttttctttctcctcttcactctcatcttttttccctttc 12641427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 40 - 342
Target Start/End: Original strand, 13448294 - 13448593
Alignment:
Q  40 caccattctgctgcaccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattg 139  Q
    |||||||||| |||||| ||||||| |||||| ||  | |  |  |||||||  ||||| ||||||||||  ||| |||| || ||||||||||||||||    
T  13448294 caccattctgttgcaccgacttcaactccaattcctcggaattgtgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattg 13448393  T
Q  140 ggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggccca 239  Q
    | |  || |||||||||||||| | ||| ||||||| ||||||||||||||||||  | ||||| || | ||||| ||  ||| |||| |||||||||||    
T  13448394 gaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggccca 13448493  T
Q  240 ccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccct 339  Q
     ||| ||||||||||||||||||||    | || ||||||||||||||||| ||||  |||||||| |||||||| ||||||||||||||  ||||||||    
T  13448494 acccctaatgatcaaacccttcttcc---cgatatttctctcttcaaatcccttcggtaaccacttttctttctcttcttcgctctcatcttctttccct 13448590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 40 - 342
Target Start/End: Original strand, 13454765 - 13455064
Alignment:
Q  40 caccattctgctgcaccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattg 139  Q
    |||||||||| |||||| |||||||||||||| ||  | || |  ||||| |  ||||||||||||||||  ||| |||| || ||||||||||||||||    
T  13454765 caccattctgttgcaccgacttcaattccaattcctcgaacttgtgttattagtttctcgttgtagaattgatctccatggactggccacgttatcattg 13454864  T
Q  140 ggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggccca 239  Q
    | |  ||    ||||||||||| | | | ||||||| ||||||||||||||||||  | ||||| || | ||| | ||  ||| ||||||||||||||||    
T  13454865 gaactcccatgctaacagcctctacgattgagttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggccca 13454964  T
Q  240 ccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgctctcatccactttccct 339  Q
     ||| |||||||||||||||| ||||   | |||||| ||||||||||||| |||| ||||||||| | |||||||||||||||||||||  ||||||||    
T  13454965 acccctaatgatcaaaccctttttct---cgatgtttttctcttcaaatcccttcggcaaccacttttgtttctcctcttcgctctcatcttctttccct 13455061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 94 - 342
Target Start/End: Original strand, 13440185 - 13440430
Alignment:
Q  94 ttctcgttgtagaattcttcttcatgtacgggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataa 193  Q
    ||||||||||||||||  ||| |||| || ||||||||||||||||| |  || |||||||||| ||| |   | ||||||| |||||||||||||||||    
T  13440185 ttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctacaattgagttccccccgcaatgcgtcataa 13440284  T
Q  194 acacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatccttt 293  Q
    |  | |||||||| | ||||| ||  ||| |||||||||||||||| |||||||||||||||||| || || |   ||||||||||||||| ||||| ||    
T  13440285 atccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctcct---aatgtttctctcttcgaatccctt 13440381  T
Q  294 cgccaaccacttgtctttctcctcttcgctctcatccactttccctttc 342  Q
     | ||||||||| |||||||| || || ||||||||  |||||||||||    
T  13440382 tggcaaccacttttctttctcttcctcactctcatcttctttccctttc 13440430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 290
Target Start/End: Complemental strand, 12590419 - 12590167
Alignment:
Q  41 accattctgctgcaccaacttcaattccaataccctgcacatcagttatcaacttctcgttgtagaattcttcttcatgtacgggccacgttatcattgg 140  Q
    |||| |||| |||||||||||| | |||||| || ||||||||||||||||||||||| ||||| || | |||  |||  |  ||||| || ||||| ||    
T  12590419 accaatctgttgcaccaacttccactccaattccatgcacatcagttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcgg 12590320  T
Q  141 gatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccac 240  Q
     || || |||||||| ||||| | |  ||| ||||| || ||||| ||||||||| | ||||| ||  |||||| ||  ||||| ||||||||||||||     
T  12590319 aattccagcactaaccgcctccacgacggaattccatccacaatgtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaa 12590220  T
Q  241 cccttaatgatcaaacccttcttcttt---tcaatgtttctctcttcaaatcc 290  Q
    ||| |||||||||||||||||||||||    ||||||||||||||||||||||    
T  12590219 cccctaatgatcaaacccttcttctttctcccaatgtttctctcttcaaatcc 12590167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 329
Target Start/End: Complemental strand, 12483631 - 12483423
Alignment:
Q  124 ggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatca 223  Q
    |||||||| |||||||| |||||||||||||| || || |     || ||||| || || || ||||||||  ||||||| || | ||||| ||  ||||    
T  12483631 ggccacgtgatcattggaatccctgcactaaccgcttccacaacagaattccatccacagtgagtcataaatgcacccactgcagggtggctcaaaatca 12483532  T
Q  224 taacttgtggggcccaccccttaatgatcaaacccttcttctt--ttc-aatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttc 320  Q
      || ||||| ||||||||| | ||||| |||||| |||| ||  ||| |||||||||||| |||||||| |||| ||||||||| ||||||||||| ||    
T  12483531 gtacctgtggtgcccaccccctgatgattaaacccatcttattccttctaatgtttctctcctcaaatcccttcggcaaccacttttctttctcctcatc 12483432  T
Q  321 gctctcatc 329  Q
    |||||||||    
T  12483431 gctctcatc 12483423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 124 - 342
Target Start/End: Complemental strand, 3417691 - 3417476
Alignment:
Q  124 ggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatca 223  Q
    ||||||||||||||||| |  ||||||| |||||||||||     ||||||| ||| ||||| ||||||||  | || ||||| | ||||| ||  |||     
T  3417691 ggccacgttatcattggaactcctgcaccaacagcctcaacaaatgagttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatct 3417592  T
Q  224 taacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgct 323  Q
     ||| ||||||||||| ||| ||| |||||||||||||||   | ||||||||||||| |||||||| |||| ||||||||| |||||||| |||||| |    
T  3417591 gaacctgtggggcccaacccctaacgatcaaacccttctt---tccaatgtttctctcctcaaatcccttcggcaaccacttttctttctcttcttcgtt 3417495  T
Q  324 ctcatccactttccctttc 342  Q
    ||||||  |||| ||||||    
T  3417494 ctcatcttcttttcctttc 3417476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 339
Target Start/End: Original strand, 12540700 - 12540912
Alignment:
Q  124 ggccacgttatcattgggatccctgcactaacagcctcaatggtggagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatca 223  Q
    ||||||||||||||||| |  || |||| ||||||||| |   | ||||| | ||| ||||| ||||||||  | |||||||| | ||||| ||  |||     
T  12540700 ggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatct 12540799  T
Q  224 taacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctcttcgct 323  Q
    |||| ||||||||||| ||| |||||||||||||||| ||   | ||||||||||||| |||||||| |||| || |||||| |||||||| |||||  |    
T  12540800 taacctgtggggcccaacccctaatgatcaaacccttttt---tccaatgtttctctcctcaaatcccttcggcatccacttttctttctcttcttcagt 12540896  T
Q  324 ctcatccactttccct 339  Q
    ||||||  ||||||||    
T  12540897 ctcatcttctttccct 12540912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 342
Target Start/End: Original strand, 28385445 - 28385564
Alignment:
Q  220 atcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcgccaaccacttgtctttctcctctt 319  Q
    |||| ||||||||||||||| ||| | || || |||||||||||   | ||||||||||||| |||||||| || | || |||||| |||||||| ||||    
T  28385445 atcagaacttgtggggcccaacccctgattatgaaacccttctt---tccaatgtttctctcctcaaatccctttggcagccacttttctttctcttctt 28385541  T
Q  320 cgctctcatccactttccctttc 342  Q
    || |||||||  |||||||||||    
T  28385542 cgatctcatcttctttccctttc 28385564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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