View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16923_low_15 (Length: 336)

Name: NF16923_low_15
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16923_low_15
NF16923_low_15
[»] chr3 (9 HSPs)
chr3 (6-318)||(13854865-13855177)
chr3 (203-309)||(1050374-1050480)
chr3 (203-309)||(1077277-1077383)
chr3 (203-309)||(1091117-1091223)
chr3 (203-285)||(1107508-1107590)
chr3 (224-285)||(5829386-5829447)
chr3 (6-77)||(1299856-1299927)
chr3 (220-258)||(5524683-5524721)
chr3 (224-285)||(20342485-20342546)
[»] scaffold0090 (1 HSPs)
scaffold0090 (13-306)||(8332-8624)
[»] chr8 (3 HSPs)
chr8 (161-318)||(23555533-23555690)
chr8 (159-310)||(23361103-23361254)
chr8 (203-258)||(23560588-23560643)
[»] chr5 (4 HSPs)
chr5 (223-309)||(28433111-28433197)
chr5 (164-285)||(22689410-22689531)
chr5 (223-309)||(28419878-28419964)
chr5 (28-83)||(28419679-28419734)
[»] chr2 (3 HSPs)
chr2 (220-285)||(34218961-34219026)
chr2 (227-285)||(34207818-34207876)
chr2 (224-285)||(34192625-34192686)
[»] chr4 (1 HSPs)
chr4 (201-288)||(36366372-36366459)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 6 - 318
Target Start/End: Original strand, 13854865 - 13855177
Alignment:
Q  6 aggagcagagaaaatgttgatatatgaatacatgtccaacaaaagtctcgattcatttctttttggtgagtaatttttcgcgaagtgtaatatttggaat 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13854865 aggagaagagaaaatgttgatatatgaatacatgtccaacaaaagtctcgattcatttctttttggtgagtaatttttcgcgaagtgtaatatttggaat 13854964  T
Q  106 gatattagtttattttgttatgcaaagaaacgacttgtaaacgtattggaggcactttacagatccatttcaaagtaaattgttggattggtctgcacgc 205  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13854965 gatattagtttattttgttatgcaaagaaacgacatgtaaacgtattggaggcactttacagatccatttcaaagtaaattgttggattggtctgcacgc 13855064  T
Q  206 ttcaacattatatttggaattgctcgagggcttctttatcttcatcaagattcaagattacggatcatacacagagatcttaaagtgagtaatattttat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13855065 ttcaacattatatttggaattgctcgagggcttctttatcttcatcaagattcaagattacggatcatacacagagatcttaaagtgagtaatattttat 13855164  T
Q  306 tagatgacgatat 318  Q
    |||||||||||||    
T  13855165 tagatgacgatat 13855177  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 309
Target Start/End: Original strand, 1050374 - 1050480
Alignment:
Q  203 cgcttcaacattatatttggaattgctcgagggcttctttatcttcatcaagattcaagattacggatcatacacagagatcttaaagtgagtaatattt 302  Q
    ||||||||||| || | |||| |||| || || ||  ||||||||||||||||||| |||||| ||||||||||  ||||||| |||   ||||||||||    
T  1050374 cgcttcaacatcatttgtggagttgcccgtggactgatttatcttcatcaagattctagattaaggatcatacatcgagatctaaaaccaagtaatattt 1050473  T
Q  303 tattaga 309  Q
    |||||||    
T  1050474 tattaga 1050480  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 309
Target Start/End: Original strand, 1077277 - 1077383
Alignment:
Q  203 cgcttcaacattatatttggaattgctcgagggcttctttatcttcatcaagattcaagattacggatcatacacagagatcttaaagtgagtaatattt 302  Q
    |||||||||||| | | ||||||||| || || ||  ||||||||||||||||||| |||||  ||||||||||  ||||||| |||   ||||||||||    
T  1077277 cgcttcaacattgtttgtggaattgcccgtggactgatttatcttcatcaagattctagattgaggatcatacatcgagatctaaaaccaagtaatattt 1077376  T
Q  303 tattaga 309  Q
    |||||||    
T  1077377 tattaga 1077383  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 309
Target Start/End: Original strand, 1091117 - 1091223
Alignment:
Q  203 cgcttcaacattatatttggaattgctcgagggcttctttatcttcatcaagattcaagattacggatcatacacagagatcttaaagtgagtaatattt 302  Q
    ||||||||||| || | |||| ||||||| || ||  ||||||||||||||||||| |||||  ||||||||||  ||||||| |||   ||||||||||    
T  1091117 cgcttcaacatcatttgtggagttgctcgtggactgatttatcttcatcaagattctagattgaggatcatacatcgagatctaaaaccaagtaatattt 1091216  T
Q  303 tattaga 309  Q
    |||||||    
T  1091217 tattaga 1091223  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 285
Target Start/End: Original strand, 1107508 - 1107590
Alignment:
Q  203 cgcttcaacattatatttggaattgctcgagggcttctttatcttcatcaagattcaagattacggatcatacacagagatct 285  Q
    ||||| ||||| |||| |||||| ||||| || ||| ||||||||||||||||||| |||||  |||||||||| ||||||||    
T  1107508 cgctttaacatcatatgtggaatcgctcgtggacttatttatcttcatcaagattctagattgaggatcatacatagagatct 1107590  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 5829386 - 5829447
Alignment:
Q  224 attgctcgagggcttctttatcttcatcaagattcaagattacggatcatacacagagatct 285  Q
    |||||||| ||||| |||||||| ||||||||||||| |||  |||||||||| ||||||||    
T  5829386 attgctcgtgggctgctttatctccatcaagattcaacattgaggatcatacatagagatct 5829447  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 1299927 - 1299856
Alignment:
Q  6 aggagcagagaaaatgttgatatatgaatacatgtccaacaaaagtctcgattcatttctttttggtgagta 77  Q
    ||||| ||||| |||| | || |||||||| ||| ||||||||||  | |||||||||||||||||||||||    
T  1299927 aggagaagagagaatgcttatctatgaatatatgcccaacaaaagcttagattcatttctttttggtgagta 1299856  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 5524721 - 5524683
Alignment:
Q  220 tggaattgctcgagggcttctttatcttcatcaagattc 258  Q
    |||||||||||||||||| || |||||||||||||||||    
T  5524721 tggaattgctcgagggctgctatatcttcatcaagattc 5524683  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 20342546 - 20342485
Alignment:
Q  224 attgctcgagggcttctttatcttcatcaagattcaagattacggatcatacacagagatct 285  Q
    |||||||| |||||||| ||||| ||||||||||| | | |||| |||||||| ||||||||    
T  20342546 attgctcgggggcttctgtatctccatcaagattctacactacgaatcatacatagagatct 20342485  T

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Target: scaffold0090 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 8624 - 8332
Alignment:
Q  13 gagaaaatgttgatatatgaatacatgtccaacaaaagtctcgattcatttctttttggtgagtaatttttcgcgaagtgtaatatttggaatgatatta 112  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| ||||||| |    
T  8624 gagaaaatgttgatttatgaatacatgtccaacaaaagtctcgatacatttctttttggtgagtaattttttgcaaagtgtaatatttggtatgatataa 8525  T
Q  113 gtttattttgttatgcaaagaaacgacttgtaaacgtattggaggcactttacagatccatttcaaagtaaattgttggattggtctgcacgcttcaaca 212  Q
    |||||   | ||||| |||||||  |||  ||||| ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8524 gtttaaaat-ttatgtaaagaaattactaataaacatattgaacacactttacagatccatttcaaagtaaattgttggattggtctgcacgctttaaca 8426  T
Q  213 ttatatttggaattgctcgagggcttctttatcttcatcaagattcaagattacggatcatacacagagatcttaaagtgagtaatattttatt 306  Q
    || |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  8425 ttctatttggaattgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacacagagatctgaaagtgagtaatattttatt 8332  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 318
Target Start/End: Original strand, 23555533 - 23555690
Alignment:
Q  161 tttacagatccatttcaaagtaaattgttggattggtctgcacgcttcaacattatatttggaattgctcgagggcttctttatcttcatcaagattcaa 260  Q
    |||||||||||| ||||||||||| |||| ||||||||  | || || |||||  | | ||||||||||||||| ||||||||| | |||||||||||||    
T  23555533 tttacagatccaattcaaagtaaactgttagattggtcgacgcgttttaacatcttgtatggaattgctcgaggtcttctttatttacatcaagattcaa 23555632  T
Q  261 gattacggatcatacacagagatcttaaagtgagtaatattttattagatgacgatat 318  Q
    ||||  |||||||||| |||||| | || |  |||||||||||||||||  |||||||    
T  23555633 gattgaggatcatacatagagatttgaaggcaagtaatattttattagacaacgatat 23555690  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 310
Target Start/End: Original strand, 23361103 - 23361254
Alignment:
Q  159 actttacagatccatttcaaagtaaattgttggattggtctgcacgcttcaacattatatttggaattgctcgagggcttctttatcttcatcaagattc 258  Q
    ||||||||||| | | || ||||||| | || ||||||| | | || ||||||||||||  ||| || ||| |||| |||||||| ||||| || |||||    
T  23361103 actttacagattcgtctcgaagtaaagttttagattggtatacgcggttcaacattataggtggtatcgctagaggacttctttaccttcaccaggattc 23361202  T
Q  259 aagattacggatcatacacagagatcttaaagtgagtaatattttattagat 310  Q
     |||||| ||||||||||  ||||| | |||| |||||||||||||||||||    
T  23361203 tagattaaggatcatacatcgagatttaaaagcgagtaatattttattagat 23361254  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 23560643 - 23560588
Alignment:
Q  203 cgcttcaacattatatttggaattgctcgagggcttctttatcttcatcaagattc 258  Q
    |||||||||||||| |  |||||||| ||||| |||||||||||||||||||||||    
T  23560643 cgcttcaacattatttgcggaattgcccgaggtcttctttatcttcatcaagattc 23560588  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 309
Target Start/End: Original strand, 28433111 - 28433197
Alignment:
Q  223 aattgctcgagggcttctttatcttcatcaagattcaagattacggatcatacacagagatcttaaagtgagtaatattttattaga 309  Q
    ||||||||||||  |||  ||||||||||||||||| |||||| ||||||||||||||||||| || |  |||||||||||| ||||    
T  28433111 aattgctcgaggaattcaatatcttcatcaagattctagattaaggatcatacacagagatctaaaggcaagtaatattttactaga 28433197  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 285
Target Start/End: Complemental strand, 22689531 - 22689410
Alignment:
Q  164 acagatccatttcaaagtaaattgttggattggtctgcacgcttcaacattatatttggaattgctcgagggcttctttatcttcatcaagattcaagat 263  Q
    ||||||||| |||||||||  || || |||||| |||  |||||||||||  |   || |||||||||||| ||||||||||||||||||||||| | ||    
T  22689531 acagatccagttcaaagtaggttcttagattggcctgtgcgcttcaacatgttgaatgcaattgctcgaggacttctttatcttcatcaagattctatat 22689432  T
Q  264 tacggatcatacacagagatct 285  Q
    || | |||||||| || |||||    
T  22689431 taagaatcatacatagggatct 22689410  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 309
Target Start/End: Original strand, 28419878 - 28419964
Alignment:
Q  223 aattgctcgagggcttctttatcttcatcaagattcaagattacggatcatacacagagatcttaaagtgagtaatattttattaga 309  Q
    ||||||||||||  |||  ||||||||||||||||| |||||| |||||||||| || ||| | || | ||||||||||||| ||||    
T  28419878 aattgctcgaggaattcaatatcttcatcaagattctagattaaggatcatacatagggatttgaaggcgagtaatattttactaga 28419964  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 28419679 - 28419734
Alignment:
Q  28 tatgaatacatgtccaacaaaagtctcgattcatttctttttggtgagtaattttt 83  Q
    |||||||||||| | |||||||| || ||||||||||||||||||  |||||||||    
T  28419679 tatgaatacatgccaaacaaaagccttgattcatttctttttggtttgtaattttt 28419734  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 34218961 - 34219026
Alignment:
Q  220 tggaattgctcgagggcttctttatcttcatcaagattcaagattacggatcatacacagagatct 285  Q
    ||||||||||||||| ||||||||||||||| ||||||| |||||| |||| || |||||||||||    
T  34218961 tggaattgctcgaggccttctttatcttcatgaagattctagattaaggattatccacagagatct 34219026  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 34207818 - 34207876
Alignment:
Q  227 gctcgagggcttctttatcttcatcaagattcaagattacggatcatacacagagatct 285  Q
    |||||||| ||||||||||||||| ||||||| |||||| |||| || |||||||||||    
T  34207818 gctcgaggacttctttatcttcatgaagattctagattaaggattatccacagagatct 34207876  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 34192686 - 34192625
Alignment:
Q  224 attgctcgagggcttctttatcttcatcaagattcaagattacggatcatacacagagatct 285  Q
    ||||||||||| ||||| ||||||||| ||||||| |||||| |||| || |||||||||||    
T  34192686 attgctcgaggacttctctatcttcatgaagattctagattaaggattatccacagagatct 34192625  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 36366372 - 36366459
Alignment:
Q  201 cacgcttcaacattatatttggaattgctcgagggcttctttatcttcatcaagattcaagattacggatcatacacagagatcttaa 288  Q
    |||||||||||||||||   ||||| ||| |||| ||||| |||||||| |||||||| |||||  ||||||| || |||||||||||    
T  36366372 cacgcttcaacattataagcggaatagctagaggacttctgtatcttcaccaagattctagatttaggatcatccatagagatcttaa 36366459  T

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