View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16923_low_16 (Length: 332)
Name: NF16923_low_16
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16923_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 36075554 - 36075854
Alignment:
| Q |
10 |
attatactgccaaagaaagttaaatgcctcataatctcaaccataataatgatgaaattgatgcttatttctgctggtcttggatttagaacctcaaaat |
109 |
Q |
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| T |
36075554 |
attatactgccaaagaaagttaaatgccttat---ctcaaccataataatgatgaaattgatgctt---tctgctggtcttggatttagaacctcaaaat |
36075647 |
T |
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| Q |
110 |
ttaagagaacttgatacatttctagccactggtcttggatttataagctcgatcttaagggatacatttcccacatacatacacaactgaacataaatct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36075648 |
ttaagagaacttgatacatttctagccactggtcttggatttataagctcgatcttaacggatacatttcccacatacatacacaactgaacataaatct |
36075747 |
T |
|
| Q |
210 |
tcagttttttcacacaatctgaaaaattgaatagaatgactcgtttattgccaacaaccatatttg-aaagatgtgattaatagtttcgagtttaccaca |
308 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
36075748 |
tcagttttttcacacaatctgaataattgaatagaatgactcgtttattgccaacaaccataattgaaaagatgtgattaatagtttcgagtttaccaca |
36075847 |
T |
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| Q |
309 |
accataa |
315 |
Q |
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||||||| |
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| T |
36075848 |
accataa |
36075854 |
T |
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