View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16923_low_2 (Length: 614)

Name: NF16923_low_2
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16923_low_2
NF16923_low_2
[»] chr7 (1 HSPs)
chr7 (17-608)||(3772949-3773549)
[»] chr2 (1 HSPs)
chr2 (18-577)||(44943248-44943803)
[»] chr5 (1 HSPs)
chr5 (18-577)||(22966360-22966914)


Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 608
Target Start/End: Original strand, 3772949 - 3773549
Alignment:
Q  17 aagatgatgatgagttttttgaggtcggaggctacgacagcgtaaacgttatgcaaaggcgaagacgtggttctgcgacatcttacaccaacgtttctgg 116  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3772949 aagataatgatgagttttgtgaggtcggaggctacgacagcgtaaacgttatgcaaaggcaaagacgtggttctgcgacatcttacaccaacgtttctgg 3773048  T
Q  117 gtttcttgattgaattctcctcctcgctgcgtttttgggttgannnnnnnnnnnnnaatgaatatatgcattttctatttttattggaaaaacta--tca 214  Q
     |||||||||||||||||||||||||| |||||||||||||||             ||||||||||||||||||||||||||| ||||||||  |  |||    
T  3773049 atttcttgattgaattctcctcctcgccgcgtttttgggttgatttttttgtttttaatgaatatatgcattttctatttttactggaaaaaaaacatca 3773148  T
Q  215 cagttaaaaaataatcaaattaaaaattcaannnnnnnccttctttacctcactgtttgttagattgaaaaaccatcgtacttgcataattatattacct 314  Q
    |||||||||||||||| ||||||||||||||       |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3773149 cagttaaaaaataatcgaattaaaaattcaatttttttccttcttttcctcactgtttgttagattgaaaaaccatcgtacttgcataattatattaact 3773248  T
Q  315 gggtttgcaaaacaataatcaaataatgaatttagatggaatagagaggttgtggtttattcaaaattcaatttattatagaaaaccaataattgaatga 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3773249 gggtttgcaaaacaataatcaaataatgaatttagatggaatagagaggttgtggtttattcaaaattcaatttattatagaaaaccaataattgaatga 3773348  T
Q  415 tgaaaattcaattcttgttggatgggatgaggatctgagtttctgaaatcgaaacaaccaggcaaatagagaagatgaaaggttcctttttaaaaagaag 514  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  3773349 tgaaaattcaattcttgttggatgggatgaagatctgagtttctgaaatcgaaacaaccaggaaaatagagaagatgaaaggttcttttttgaaaagaag 3773448  T
Q  515 agaagatgaaggtcaacaatttagagcacgtgacttttaaaatggaacttttaaatctcagcc-------ttgatctaatggttatgtttgttcatctca 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||| |||||    
T  3773449 agaagatgaaggtcaacaatttagagcacgtgacttttaaaatggaacttttaaatctcagccacttgttttgatctaatggttatgtttgttcctctca 3773548  T
Q  608 c 608  Q
    |    
T  3773549 c 3773549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 577
Target Start/End: Complemental strand, 44943803 - 44943248
Alignment:
Q  18 agatgatgatgagttttttgaggtcggaggctacgacagcgtaaacgttatgcaaaggcgaagacgtggttctgcgacatcttacaccaacgtttctggg 117  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||     |  |||  | ||||||||||||    
T  44943803 agatgatgatgggttttgtgaggtcggaggctacgacaacgtaaacgttatgcaaaggcgaagacgtggttctt----acgttatgc-aacgtttctggg 44943709  T
Q  118 tttcttgattgaattctcctcctcgctgcgtttttgggttgannnnnnnnnnnnnaatgaatatatgcattttctatttttattggaaaaactatcacag 217  Q
    |||||||||||||||||||||||||| |||||||||||||||             ||||||||||||||||||||| ||||||||||||||| |||||||    
T  44943708 tttcttgattgaattctcctcctcgccgcgtttttgggttgatttttttgtttttaatgaatatatgcattttctacttttattggaaaaaccatcacag 44943609  T
Q  218 ttaaaaaataatcaaattaaaaattcaannnnnnn-ccttctttacctcactgtttgttagattgaaaaaccatcgtacttgcataattatattacctgg 316  Q
    ||||||||||||| ||||||||||||||        |||||||| |||| |||||||||||||| | ||||||| ||| |||||||||||||||| ||||    
T  44943608 ttaaaaaataatcgaattaaaaattcaattttttttccttcttttcctctctgtttgttagattaacaaaccatggtatttgcataattatattaactgg 44943509  T
Q  317 gtttgcaaaacaataatcaaataatgaatttagatggaatagagaggttgtggtttattcaaaattcaatttattatagaaaaccaataattgaatgatg 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44943508 gtttgcaaaacaataatcaaataatgaatttagatggaatagagaggttgtggtttattcaaaattcaatttattatagaaaaccaataactgaatgatg 44943409  T
Q  417 aaaattcaattcttgttggatgggatgaggatctgagtttctgaaatcgaaacaaccaggcaaatagagaagatgaaaggttcctttttaaaaagaagag 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44943408 aaaattcaattcttgttggatgggatgaggatctgagtttctgaaatcgaaacaaccaggcaaatagagaagatgaaaggttcttttttaaaaagaagag 44943309  T
Q  517 aagatgaaggtcaacaatttagagcacgtgacttttaaaatggaacttttaaatctcagcc 577  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44943308 aagatgaaggtcaacaatttagagcacgtgacttttaaaatggaacttttaaatctcagcc 44943248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 577
Target Start/End: Complemental strand, 22966914 - 22966360
Alignment:
Q  18 agatgatgatgagttttttgaggtcggaggctacgacagcgtaaacgttatgcaaaggcgaagacgtggttctgcgacatcttacaccaacgtttctggg 117  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||     |  |||  | ||||||||||||    
T  22966914 agatgatgatgggttttgtgaggtcggaggctacgacaacgtaaacgttatgcaaaggcgaagacgtggttctt----acgttatgc-aacgtttctggg 22966820  T
Q  118 tttcttgattgaattctcctcctcgctgcgtttttgggttgannnnnnnnnnnnnaatgaatatatgcattttctatttttattggaaaaactatcacag 217  Q
    |||||||||||||||||||||||||| |||||||||||||||             ||||||||||||||||||||| ||||||| ||||||| |||||||    
T  22966819 tttcttgattgaattctcctcctcgccgcgtttttgggttgatttttttgtttttaatgaatatatgcattttctacttttattagaaaaaccatcacag 22966720  T
Q  218 ttaaaaaataatcaaattaaaaattcaannnnnnn-ccttctttacctcactgtttgttagattgaaaaaccatcgtacttgcataattatattacctgg 316  Q
    ||||||||||||| ||||||||||||||        |||||||| |||| |||||||||||||| ||||||||| ||| |||||||||||||||| ||||    
T  22966719 ttaaaaaataatcgaattaaaaattcaattttttttccttcttttcctctctgtttgttagattaaaaaaccatggtatttgcataattatattaactgg 22966620  T
Q  317 gtttgcaaaacaataatcaaataatgaatttagatggaatagagaggttgtggtttattcaaaattcaatttattatagaaaaccaataattgaatgatg 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22966619 gtttgcaaaacaataatcaaataatgaatttagatggaatagagaggttgtggtttattcaaaattcaatttattatagaaaaccaataactgaatgatg 22966520  T
Q  417 aaaattcaattcttgttggatgggatgaggatctgagtttctgaaatcgaaacaaccaggcaaatagagaagatgaaaggttcctttttaaaaagaagag 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||  ||||||    
T  22966519 aaaattcaattcttgttggatgggatgaggatctgagtttctgaaatcgaaacaaccaggcaaatagagaagatgaaaggtt-cttttaaaatggaagag 22966421  T
Q  517 aagatgaaggtcaacaatttagagcacgtgacttttaaaatggaacttttaaatctcagcc 577  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22966420 aagatgaaggtcaacaatttagagcacgtgacttttaaaatggaacttttaaatctcagcc 22966360  T

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