View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16923_low_22 (Length: 269)
Name: NF16923_low_22
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16923_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 40381671 - 40381929
Alignment:
| Q |
1 |
tgaaacaacaagactaatttaattcccattaaaaaattgtatctatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaatggt |
100 |
Q |
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| T |
40381671 |
tgaaacaacaagactaatttaattcccattaaaaaattgtatctatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaatggt |
40381770 |
T |
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| Q |
101 |
aacctcaatatctttaggacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgttgg |
200 |
Q |
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| T |
40381771 |
aacctcaatatctttaggacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgttgg |
40381870 |
T |
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| Q |
201 |
tcaaacatcatttgcaacttccttccttgttcctctattcgcaactgtaattttctctg |
259 |
Q |
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| T |
40381871 |
tcaaacatcatcttcaacttccttccttattcctctattcgcaactgtaattttctctg |
40381929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 3 - 255
Target Start/End: Original strand, 22812242 - 22812490
Alignment:
| Q |
3 |
aaacaacaagactaatttaattcccattaaaaaattgtatctatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaatggtaa |
102 |
Q |
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| T |
22812242 |
aaacaacaagactaatttaattcccattacaaaattgtat----ggtttggttttctgtcagttatgagtattgagaatgagacccttcaaaaatggtaa |
22812337 |
T |
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| Q |
103 |
cctcaatatctttaggacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgttggtc |
202 |
Q |
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| T |
22812338 |
cctcaatatctttaggactaattggtgtatcattgtttggtgtattgtccaaattttgagtgttcaattggcaagtactatttgtcttctgttgttggtc |
22812437 |
T |
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| Q |
203 |
aaacatcatttgcaacttccttccttgttcctctattcgcaactgtaattttc |
255 |
Q |
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| T |
22812438 |
aaacatcatcttcaactgctttccttgttcctctattcgcaactgtaattttc |
22812490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 22809496 - 22809618
Alignment:
| Q |
86 |
cccttcaaaaatggtaacctcaatatctttaggacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactactt |
185 |
Q |
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|||||||||||| | || |||| |||||||||| || ||||| |||||||||||| |||| |||||||||| ||||||||| |||||||| ||||||| |
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| T |
22809496 |
cccttcaaaaattgaaatctcagtatctttaggcctgtttggtttatcattgtttgatgtaatgtccaaattccgagtgttcatttggccactactactt |
22809595 |
T |
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| Q |
186 |
gtcttctgatgttggtcaaacat |
208 |
Q |
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| T |
22809596 |
ctcttctgctgttggtcaaacat |
22809618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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