View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16923_low_23 (Length: 254)
Name: NF16923_low_23
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16923_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 72 - 242
Target Start/End: Original strand, 34347633 - 34347803
Alignment:
| Q |
72 |
cccaaattttagacttatttttggggtctggaacagtcgtactcctcgcccggcctcacatacgaccctgaatagaaggaatagtatagttagtgaggta |
171 |
Q |
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| T |
34347633 |
cccaaattttagacttatttttggggtctagaacagtcgtcctccttgcccggcctcacatacgaccctgaatagaaggaatagtatagttagtggggta |
34347732 |
T |
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| Q |
172 |
tgtagttaagtgggttgagatgcaataaacaagagtatataatttgaccccttctcctctctatatatttt |
242 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
34347733 |
cgtggttaagtgggttgagatgcaataaacaagagtatataatttaacctcttctcctctctatatatttt |
34347803 |
T |
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