View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16923_low_27 (Length: 239)
Name: NF16923_low_27
Description: NF16923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16923_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 40381556 - 40381337
Alignment:
| Q |
1 |
tcagctctgtgcagggttgtcctttttacttgctccctctgcatttaaggaaagatgaacctatattacttggtcatttcaattattctttagattccat |
100 |
Q |
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| T |
40381556 |
tcagctctgtgcagggttgtcctttttacttgctccctctgcattcaaggaaagatgaacctatattacttggtcatttcaattattctttaggttccat |
40381457 |
T |
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| Q |
101 |
catccatgtaatttcaaaactatatttcttgttcttaattttcaattacttgcaaattagagagccacttcagtttcaactacatgtttccaagccttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40381456 |
catccatgtaatttcaaaactatatttcttgttcttaattttcaattacttgcaaattagagagccacttcagtttcaactacatgtttccaagccttct |
40381357 |
T |
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| Q |
201 |
tcatgaacaactagaggtat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
40381356 |
tcatgaacaactagaggtat |
40381337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 22810034 - 22809934
Alignment:
| Q |
118 |
aactatatttcttgttcttaattttcaattacttgcaaattagagagccacttcagtttcaactacatgtttccaagccttcttcatgaacaactagagg |
217 |
Q |
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||||||| |||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
22810034 |
aactatacttcttgttcttacttatcaattacttgcaaattagagagccacttcagcttcaactacatgtttccaag-cttcttcatgaacagctagagg |
22809936 |
T |
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| Q |
218 |
ta |
219 |
Q |
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|| |
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| T |
22809935 |
ta |
22809934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 22793913 - 22793867
Alignment:
| Q |
29 |
cttgctccctctgcatttaaggaaagatgaacctatattacttggtc |
75 |
Q |
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|||||||||||| |||||||||| ||||||| | ||||||||||||| |
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| T |
22793913 |
cttgctccctctacatttaaggatagatgaatccatattacttggtc |
22793867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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